Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq33 154 3e-32 seq1698 98.7 2e-15 seq1061 96.9 8e-15 >seq33 Length=2144867 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || |||||| Sbjct 1190741 ATGCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 1190682 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || ||||| || |||||||| || || ||| Sbjct 1190681 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGA 1190622 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| ||||| || || || ||||||||||| | || ||||| || || Sbjct 1190621 GGAATGCCTTCTTTGTCCTGGATTTTGGCCTTTACATTTTCAATTGTGTCGCTGGGCTCA 1190562 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || ||||| ||||| |||||||| Sbjct 1190561 ACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 1190512 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || || || | || || || ||||| || || |||||| Sbjct 1190513 ATACCACCCCTGAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 1190454 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || ||||| || |||||||| || ||||| Sbjct 1190453 GACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGG 1190394 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| || || || ||||||||||| | || ||||| || || Sbjct 1190393 GGAATGCCCTCCTTGTCCTGGATTTTGGCCTTTACATTTTCAATTGTGTCGCTGGGCTCA 1190334 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||||| || || || ||||| ||||| || || || ||||| |||||||| || Sbjct 1190333 ACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATCTT 1190281 >seq1698 Length=2458952 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 || |||||||| ||||| || || || ||||| || || || ||||| ||||||| ||| Sbjct 826364 GTGGCTTTTGCAGCTGTGGAGGGCATTTTCTTCTCTGGTTCATTTGCTGCTATCTACTGG 826423 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 || ||||| || ||||| ||||| ||| | || | ||| ||||| | || ||||||||| Sbjct 826424 TTAAAGAAGAGGGGCCTAATGCCTGGACTTACCTACTCCAACGAGCTCATTAGCAGGGAC 826483 Query 269258 GA 269259 || Sbjct 826484 GA 826485 >seq1061 Length=1507073 Score = 96.9 bits (106), Expect = 8e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78486 GAGCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCA 78545 |||| | |||||||||| |||||| || || || ||||| || || ||| | || |||| Sbjct 444955 GAGCTCTGTGGTGGTATTTTATCTCCAAGGGCATTGAATATCTGGACACTGTGTTTTTCA 444896 Query 78546 TCCTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGT 78605 |||| |||| ||||| || || ||| || || || || || || |||| | |||| Sbjct 444895 TCCTGAGAAAAAAATTCAACCAGGTTACCTTCCTGCACGTCTACCACCATTGCAGCATGT 444836 Query 78606 TTACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACA 78648 | || | | ||||| || || |||||| | ||||||||||| Sbjct 444835 TCACACTCTGGTGGATTGGCATCAAATGGGTGGCAGGAGGACA 444793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151300489037996