Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq662 89.7 3e-13 seq1357 86.0 3e-12 seq806 86.0 3e-12 seq579 86.0 3e-12 seq158 86.0 3e-12 seq1308 82.4 4e-11 seq766 82.4 4e-11 >seq662 Length=619951 Score = 89.7 bits (98), Expect = 3e-13 Identities = 74/90 (82%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||||| |||| ||||||| | |||||||||| ||||||| ||||||||||||| Sbjct 581261 AATAAATGATCA--TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCAC 581318 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||| |||||||||||||| ||||| Sbjct 581319 CACGCTCTAACCAACTGAGCTAACCGGCCG 581348 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 581564 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 581505 Query 11528 CC 11529 || Sbjct 581504 CC 581503 >seq1357 Length=1100848 Score = 86.0 bits (94), Expect = 3e-12 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||| Sbjct 1061116 ATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCA 1061175 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 1061176 ACTGAGCTAACCGGCC 1061191 >seq806 Length=4081865 Score = 86.0 bits (94), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 5/96 (5%) Strand=Plus/Minus Query 11437 AATTAATAAAAAATCAAAT---TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 || ||| |||||| |||| |||||| | |||||||||| ||||||| |||||| Sbjct 1822956 AAATAAAAAAAAA--AAATGTATGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTA 1822899 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||| |||||||||||||| |||| Sbjct 1822898 TTAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 1822863 >seq579 Length=1637584 Score = 86.0 bits (94), Expect = 3e-12 Identities = 80/101 (79%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 ||| ||| ||| |||||| || | |||||| | |||||||||| ||||||| | Sbjct 965237 AAAAATA-AATAAATAAATAAGTACCATGGCCCGTACGGGGATCGAACCCGCGACCTTGG 965295 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| ||||||| |||||||||||||| |||| Sbjct 965296 CGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 965336 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 969866 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 969925 Query 11528 CC 11529 || Sbjct 969926 CC 969927 >seq158 Length=1327284 Score = 86.0 bits (94), Expect = 3e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 || |||| | ||||||| | |||||||||| ||||||| ||||||||||||| || Sbjct 1180195 AATAAATGTAGTTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 1180136 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||| |||| Sbjct 1180135 GCTCTAACCAACTGAGCTAACCGGCC 1180110 >seq1308 Length=1363149 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 333657 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 333598 Query 11528 CC 11529 || Sbjct 333597 CC 333596 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1248576 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1248635 Query 11528 CC 11529 || Sbjct 1248636 CC 1248637 >seq766 Length=314668 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 300438 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 300497 Query 11528 CC 11529 || Sbjct 300498 CC 300499 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261470048385412