Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq314 111 2e-19 seq9 105 9e-18 seq268 96.9 5e-15 >seq314 Length=1288623 Score = 111 bits (122), Expect = 2e-19 Identities = 177/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | ||| || || | ||||| || ||| ||| ||| ||| | || || Sbjct 650283 TCACCAATTAGGATAAGACGTGCAGTCTGGAAGAGTCTTTCATCATCCCAGTAAGGGTGA 650342 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 | ||||| ||||| ||||| | ||||||||| | |||||||| ||||| |||||| Sbjct 650343 ACCTCTTTCAATACATCACACACACGGTTGTGTTCACGAAGCCAGATGGTAGCATACATC 650402 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 || ||||| || ||||||||||| ||||| || || ||||| | || | | || || Sbjct 650403 ATCAGACCGGGAACCAGGCCAAATGCCTCGTGGCCAACAGCAAAGCGGAGAGAATCTGGG 650462 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | |||||| || ||| | || || || || || | ||||| ||||| || Sbjct 650463 ACGTGGGGAGGGTAATGCATTTCAACACCCACTTCCTTAACTGTCGGGGGGTACATCTCT 650522 Query 9850 CCGTCAATAATCTG 9863 || |||| ||||| Sbjct 650523 CCATCAAGGATCTG 650536 Score = 96.9 bits (106), Expect = 5e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 8765 CCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGCCT 8824 || || ||||||||||| |||||||| |||||||||||||| || |||| | ||| Sbjct 648532 CCTCCAAAGGTGCTGGGCTTCCAGTACTCCGGGGAGCAGATGGGATTTCCCATTAAGCCC 648591 Query 8825 TTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGG 8884 || ||||| || |||||||||| ||| | || | || || || || | || || | | Sbjct 648592 TTAAGGGAGAAAGGAGCCCCCATCTCCACCATTGTTTCCCCAAAAATACCATTAGGTCTG 648651 Query 8885 GGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAGGGCC 8944 || || ||||| | | || | ||| | ||||||||| || | || || || | || Sbjct 648652 GGTTTCTCCACTAGCAGGCCTGGGTAGAGCTCCACAGCATCAACATCCCCATACATTTCC 648711 Query 8945 CTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || ||||| ||||| || ||||||| Sbjct 648712 TCCAGCAGTGCAGCCATTTCTTTCTCTCCTG 648742 Score = 86.0 bits (94), Expect = 9e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 10287 TCACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 10346 |||||| || || | ||| ||||| ||||||| || || || || || || || | Sbjct 651282 TCACCTACTACTCCCATAGGGGTTGGGCAATCGTCGGGCACAGGGGGGAGGGCCCGTGTG 651341 Query 10347 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATG 10406 |||||||| || |||||| | ||||||||||| ||| || || ||| |||| || | Sbjct 651342 TAATAGGAAAGGTTGGAGTAGGCTTCCCAGCTCTTGTAATCATAATCCACGTTATAAGTC 651401 Query 10407 GGAGGGCTGTCAATCAAATCGG 10428 ||||| || ||||||| || || Sbjct 651402 GGAGGACTATCAATCATATGGG 651423 >seq9 Length=473932 Score = 105 bits (116), Expect = 9e-18 Identities = 178/257 (69%), Gaps = 2/257 (1%) Strand=Plus/Plus Query 9597 AATGTTGATTGTT--TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCA 9654 |||||||| | || || |||||||||||||| | |||||||| || || || || ||| Sbjct 227122 AATGTTGACTTTTACTCACCGATAATGATGAGCCTGGTGGTCTGGAAAAGCTGCTCATCA 227181 Query 9655 CTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAG 9714 ||| ||||||||| ||||| | || || |||||||| || ||||| ||||| Sbjct 227182 TCCCAGGTGGGATGTTCTGCCTTCAGGATGTCACAGACTCTGTTATGCTCCCTCAGCCAT 227241 Query 9715 ATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGA 9774 | || || ||||| | ||||| |||| | ||||| || ||||||| |||||| Sbjct 227242 AGGGTGGCATACATGCTTAGACCCGGCAGGATTCCAAATAATTCCTGACCGATGGCCAGA 227301 Query 9775 CGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAG 9834 ||| | | | || | | |||||| | |||||| || |||| || || | Sbjct 227302 CGCTTGTCAGCAGGGATATTTTCAGGATACACCATGTGAACAGGGACCTCAGATACTGCA 227361 Query 9835 GGGGGATACATTTCACC 9851 || || ||||| ||||| Sbjct 227362 GGAGGGTACATCTCACC 227378 Score = 102 bits (112), Expect = 1e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 8762 TCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGG 8821 || || |||||||||||||| |||||||| | || ||||||||| ||| | | ||| Sbjct 223664 TCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCAGGTGAGCAGATGGGGTTTCCGAGCAGG 223723 Query 8822 CCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8881 ||||| || || || ||||| |||| ||| | ||||||||||| || || || | | | Sbjct 223724 CCTTTCAGAGAGAAGGGAGCACCCATCTCCACCATGCTCTCACCAAAAATTGCATCAGCA 223783 Query 8882 CGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 || | || |||| || || | ||| ||||||| || || ||||| ||||| || Sbjct 223784 CGAGCTTTCTCCAGCATTGTGCCTGGGTAAAACTCCAGCGCATCTATGTCACCGTAGAG 223842 >seq268 Length=824967 Score = 96.9 bits (106), Expect = 5e-15 Identities = 134/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| | || || ||||||||||| |||||||| | || || || || ||| Sbjct 89432 AAGCCCACTTTGCCTCCAAAGGTGCTGGGCTTCCAGTATTCTGGAGAACATATAGGGTTT 89491 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 ||| ||||||||| ||||| || || || |||| ||| | ||||| || || || || Sbjct 89492 CCCAGGAGGCCTTTTAGGGAGAAGGGGGCACCCATCTCCACCATGCTTTCTCCAAATATA 89551 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 || || || | || |||| || || || | ||| ||||||| ||| || ||||| Sbjct 89552 GCCCCTGGTCGTGTTTTCTCCAACATCAAGCCAGGGTAAAACTCCAGAGCATCAATGTCA 89611 Query 8933 CCGTAAAG 8940 ||||| || Sbjct 89612 CCGTAGAG 89619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708466019011280