Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq377 168 1e-37 seq3290 156 7e-34 seq168 152 8e-33 seq1801 132 8e-27 >seq377 Length=355286 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| ||| || ||||||||||| |||||||||||||| || || Sbjct 224137 CGCTAAGCGTCACCGCAAGGTTCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCCAT 224196 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || ||||| ||||||||| | || || || |||| || |||| Sbjct 224197 CCGCCGCCTGGCTCGCCGCGGTGGTGTCAAGCGTATTTCCGGTCTGATCTACGAGGAGAC 224256 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 224257 CCGCGGGGTCCTCAAGGTGTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 224316 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| |||||||| | || || || | || | || || Sbjct 224317 GCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTGGTGTACGCGCTCAAGAGGCAGGG 224376 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || |||||| ||||| Sbjct 224377 CCGCACTCTGTACGGCTTTGGAGGTTAA 224404 Score = 167 bits (184), Expect = 4e-37 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| ||| || ||||||||||| |||||||||||||| || || Sbjct 212007 CGCTAAGCGTCACCGCAAGGTTCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCCAT 212066 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || ||||| || |||||| | || || || |||| || |||| Sbjct 212067 CCGMCGCCTGGCTCGYCGCGGTGGYGTYAAGCGTATTTCYGGTCTGATCTACGAGGAGAC 212126 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 212127 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACGTCATCCGTGACGCCGTCACCTACACCGA 212186 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| |||||||| | || || || | || | || || Sbjct 212187 GCACGCCAAGAGGAAGACCGTGACCGCCATGGATGTGGTGTACGCGCTCAAGAGGCAGGG 212246 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || || ||| ||||| Sbjct 212247 CCGCACTCTGTACGGCTTYGGAGGTTAA 212274 Score = 161 bits (178), Expect = 2e-35 Identities = 196/268 (73%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| ||| || ||||||||||| |||||||||||||| || || Sbjct 237032 CGCCAAGCGTCACCGCAAGGTTCTCCGTGATAACATCCAGGGAATCACCAAGCCCGCCAT 236973 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || |||||||| || ||||| ||||||||| | || || || |||| || |||| Sbjct 236972 CCGCCGCCTGGCTCGCCGCGGTGGCGTCAAGCGTATTTCCGGTCTGATCTACGAGGAGAC 236913 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||| | ||||| ||| | | |||| ||| || || ||| ||||| Sbjct 236912 CCGCGGGGTGCTCAAGGTGTTCCTGGAGAACATCATCCGTGACGCCGTCACCTACACCGA 236853 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| || ||| |||||||| || || || || || | || || Sbjct 236852 GCACGCCAAGAGGAAGACCGTGACCGCCATGGATGYGGTGTACGCGTTCAAGAGGCAGGG 236793 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || || |||||| ||||| Sbjct 236792 CCGCACTCTGTACGGCTTTGGAGGTTAA 236765 >seq3290 Length=4301 Score = 156 bits (172), Expect = 7e-34 Identities = 148/189 (78%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||| | | ||| || ||||||||||| || ||||||||||| || || Sbjct 1296 CGCCAAGCGTCATCGTAAAGTTCTCCGCGATAACATCCAGGGCATCACCAAGCCCGCCAT 1355 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||||||||| ||||| |||||||||||| |||| || || |||| || |||| Sbjct 1356 CCGCCGTCTGGCTCGCCGTGGCGGAGTCAAGCGTATCTCCGGTCTGATCTACGAGGAGAC 1415 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||||| ||| ||| |||| ||| || || ||| ||||| Sbjct 1416 CCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGA 1475 Query 16612 GCACGCTAA 16620 |||||| || Sbjct 1476 GCACGCCAA 1484 >seq168 Length=1207671 Score = 152 bits (168), Expect = 8e-33 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || ||||||||||| || || ||||| || || ||||| ||||||||||||||||| Sbjct 167444 TCTCCGCGATAACATCCAGGGTATTACCAAACCCGCCATCCGCCGTCTGGCTCGTCGTGG 167503 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || || |||||| |||| || || |||| || |||| || | ||| |||||| | || Sbjct 167504 CGGTGTAAAGCGTATCTCCGGCCTGATCTACGAGGAGACCCGCGGTGTGTTGAAGGTGTT 167563 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| |||| ||| || || ||| ||||||||||| || | ||||| || Sbjct 167564 CCTGGAGAACGTGATCCGTGACGCCGTCACCTACACCGAGCACGCCAAGAGGAAGACCGT 167623 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 ||| ||||||| | || || || |||| | || ||||| Sbjct 167624 GACCGCCATGGACGTGGTGTACGCTCTGAAGAGGCAGGGCCG 167665 >seq1801 Length=82634 Score = 132 bits (146), Expect = 8e-27 Identities = 149/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 16475 ATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGA 16534 || |||||||| || ||||| ||||||||||| ||||| |||||||||||| |||| || Sbjct 47847 ATTACCAAGCCCGCCATCCGCCGTCTGGCTCGCCGTGGCGGAGTCAAGCGTATCTCCGGT 47788 Query 16535 TTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGAT 16594 || |||| || |||| || | ||| ||||| | ||||| ||| ||| |||| ||| Sbjct 47787 CTGATCTACGAGGAGACCCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGTGAC 47728 Query 16595 GCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTAT 16654 || || ||| ||||||||||| || | ||||| || ||| ||||||| | || || Sbjct 47727 GCCGTCACCTACACCGAGCACGCCAAGAGGAAGACCGTGACCGCCATGGACGTGGTGTAC 47668 Query 16655 GCATTGAAACGTCAAGGCCG 16674 || |||| | || || || Sbjct 47667 GCTCTGAAGAGGCAGGGYCG 47648 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069131744441