Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1696 219 1e-51 seq34 84.2 6e-11 >seq1696 Length=952724 Score = 219 bits (242), Expect = 1e-51 Identities = 580/875 (66%), Gaps = 28/875 (3%) Strand=Plus/Plus Query 363447 TGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGA 363506 ||| || ||||| || ||| | ||| | || || | || ||||| | ||||| | || Sbjct 104479 TGAGCGGCCGCAACACATGCTCATGAGAGTGGCCGTGGGAATCCACGGGACGGATATCGA 104538 Query 363507 TGCCGCGATTGAAACATATAAGCTTCTAAGTGCTC-GTGTATTCACGCACGCCACGCCAA 363565 || || || || || || || || || | ||| ||||| |||||| | |||| Sbjct 104539 CGCAGCCATCGAGACCTACAACCTGCTGTCGGAGAAGTGG-TTCACCCACGCCTCTCCAA 104597 Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGA 363625 | | | |||||||||||| | |||||| ||||| ||||| || || ||||| Sbjct 104598 CCCTCTTCAATGCTGGAACCAACAGGCCACAGCTGTCTAGCTGCTTCCTGCTTGCAATGA 104657 Query 363626 AGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGA 363685 ||||||| ||||||||| |||| |||||||| ||| | || || || || ||||| Sbjct 104658 AGGACGACAGCATCGAGGGCATCTACGACACACTGAAGCAATGCGCCCTCATCTCCAAAT 104717 Query 363686 ATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCG-TGCACAGAACAGTTACATTCGC 363744 || |||||||| || ||| || || | | | | |||| || |||| |||| Sbjct 104718 CGGCCGGCGGAATCGGYGTAGCGGTCAGCTGCATCAGATCAACAG-GGAGCTACA-TCGC 104775 Query 363745 -GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGC 363803 ||||| || | ||| |||||||| || |||||||| | || | |||| ||||| Sbjct 104776 TGGCACCAACGGCTGCTCCAATGGGCTCGTCCCCATGCTGAGGGTCTACAACAACACTGC 104835 Query 363804 GAGGTACGTCGACCAGGGTGG--AGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAG 363861 | |||||||||||||| || | |||| | || || || || ||||| || ||| Sbjct 104836 ACGTTACGTCGACCAGGGGGGCAACAAAAGACC--CGGAGCCTTCGCCATGTACCTGGAG 104893 Query 363862 CCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAA 363921 || ||| ||| | ||||| || || ||||| ||| ||||||||||| || || Sbjct 104894 CCCTGGCATTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAAGAG 104953 Query 363922 TTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTG 363981 ||| || | || || ||||| || || ||| | |||||| || |||||| | ||| Sbjct 104954 CAGCGAGCGAGGGACCTTTTCTACGCCCTGTGGATCCCTGACCTCTTCATGAAGAGGGTG 105013 Query 363982 GAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTA 364041 ||| | | | ||||| || | || || ||| || || || || ||| Sbjct 105014 GAGAATAATGAAGACTGGTCCCTGATGTGTCCGGCCGACTGCCCCGGGCTGGACGAGTGC 105073 Query 364042 TGGGGTGACGACTAT--GTTGCTCT-------ATACGAAAAGTATGAATCGGAGGGAAAG 364092 ||||| || || | | | ||||| |||||| ||| | | |||||| | Sbjct 105074 TGGGGGGAGGAGTTTGAGGAGCTCTACACCAGATACGAGAAGGAGG----GGAGGGTCAA 105129 Query 364093 GCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAG 364152 || || | || || ||| |||| |||| |||||||| || || |||| || Sbjct 105130 GCGTGT-GGTGAA----GGCTCAGCAGCTGTGGTACGCCATCATTGAGTCACAGACAGAA 105184 Query 364153 ACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCAC 364212 || || || || || ||| |||||||||| | |||||| | ||| |||||||||| | Sbjct 105185 ACTGGGACGCCGTACATGCTGTACAAAGAYGCCTGCAACAGGAAGAGCAACCAGCAGAAT 105244 Query 364213 CTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGAC 364272 || || || || || |||||||| || || || || | ||||||||| ||| Sbjct 105245 CTGGGGACCATCAAGTGCAGCAACCTCTGCACAGAAATCGTCGAATACACCAGCAAGGAC 105304 Query 364273 GAGACTGCCGTATGTAACCTTGCGTCGATCGCGCT 364307 ||| || || || || || || || ||||| || Sbjct 105305 GAGGTGGCTGTCTGCAATCTGGCCTCCATCGCTCT 105339 >seq34 Length=1455329 Score = 84.2 bits (92), Expect = 6e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 363838 GGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTC 363897 |||||||| ||| |||| || ||||| ||| ||| | ||||||||| | ||| | Sbjct 920221 GGGGCGTTCGCTGTGTACCTTGAGCCATGGCATTTTGATGTGTTTGAGTTTTTGGAGTTG 920162 Query 363898 CGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTT 363957 ||| ||||| || ||||| || ||| ||||| || ||||| | ||| | ||| || Sbjct 920161 AAGAAGAACACAGGTAAAGAAGAGCAGCGGGCACGGGACCTGTTTTTTGCCTTGTGGATT 920102 Query 363958 TCTGACCATTTTATGAAGCGCGTGGA 363983 | |||| |||||||||||| || || Sbjct 920101 CCAGACCTTTTTATGAAGCGAGTCGA 920076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303242767290134