Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1696 253 2e-62 seq33 114 1e-20 seq34 105 6e-18 >seq1696 Length=952724 Score = 253 bits (280), Expect = 2e-62 Identities = 977/1510 (65%), Gaps = 46/1510 (3%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 ||||||| ||||||||| || | || ||| | || || | ||| ||| ||| Sbjct 105900 TTGACGATCTGAAACTCTCCTGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCC 105841 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 || | |||||||| ||||||||||| || ||||| | || || ||||| |||| | Sbjct 105840 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTTGGCATTGGAGCCAGC 105781 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 | | || | || |||||| || || | ||||| |||| ||| ||||| Sbjct 105780 AGCAGGCTGTTCCTCACGCCGTGTTTGGCGACCTTCTCCTTCAGCGCCTTCCAGTCCCAC 105721 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || || ||| || | ||||||||||||||| || ||||||| ||| | ||| Sbjct 105720 AGGTCCGTTGGCGTCTTCTTCCACATGTCGTACTGGAAGATGCCCTTACTGACCGGGGAA 105661 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTTTT----GGCGAGCTCGCAACTCGCCTCCAG 145353 |||| | | ||| ||| || || ||| | ||| |||||||||||||| Sbjct 105660 CCTTCGTACGTCTCGTAGGGGCC----GTGTTCGGCGGCTAACTCACAACTCGCCTCCAG 105605 Query 145354 AGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTC 145413 ||| || | ||||| ||||| ||||| ||||||||||| || ||| ||| || Sbjct 105604 AGCAGCGTAGTAAATGGTCTCAAAGATTTGGATGTTGAGCAGCTGAGCCTCAGGGCTTTC 105545 Query 145414 GTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGG 145473 | || |||| ||| | ||| || || || | || || | ||| | || || || Sbjct 105544 AAATGGATAACGCATCAGGATAAAGGCGTCAGCCAATCCTTGGACTCCAATTCCTATTGG 105485 Query 145474 CCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATA-TCGATTACGGTCGATAA 145532 || || ||| || | || | ||| || | || || | | ||| | ||||||| Sbjct 105484 CCTGTGGCGCATATTAGACCTCTTGGCCTCTTCCACTGGGTAGTAGTTTATG-TCGATAA 105426 Query 145533 TTTTATTCAAGTTTCGCACTACTACCTTTGTAATG--TGCCGCAACTTTTCAAAGTCAAA 145590 | || || ||||||| || | ||| || || | |||| | |||| ||||||| | Sbjct 105425 TCTTGTTTAAGTTTCTGACAATTACTTTGGTCACAGATGCC--AGTTTTTTAAAGTCATA 105368 Query 145591 CCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGC 145650 || | ||| || | | |||| ||||| || |||| ||| || || || Sbjct 105367 ---AGTCCGCTCAGGTGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTGCAGACAGC 105311 Query 145651 CGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGT 145710 | ||| || | | |||||| ||||| || | ||| | ||||| || |||||||| Sbjct 105310 CACCTCGTCCTTGCTGGTGTATTCGACGATTTCTGTGCAGAGGTTGCTGCACTTGATGGT 105251 Query 145711 TCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCC 145770 |||||||| ||||| || || ||||||||||| || || ||||| ||||||||||| Sbjct 105250 CCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCRTCTTTGTACAGCATGTACGGCGT 105191 Query 145771 GCCAGTCTCCACCTGCGTCTCCACGATAAAACGGTGCA-AG-TCCTGCGCACGCACCTGC 145828 ||||| || ||| | ||| | ||| || || || | ||| || |||| Sbjct 105190 CCCAGTTTCTGTCTGTGACTCAATGAT--GGCGTACCACAGCTGCTGAGCCTTCACCACA 105133 Query 145829 TGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAG 145888 ||| | | ||||| | |||||| | ||||||||||||||||| | || || Sbjct 105132 CGCTTGACCCTCCCCTCCTTCTCGTATCTGGTGTAGAGCTCCTCAAACTCCTCCCCCCAG 105073 Query 145889 CAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTG 145948 || ||| ||| ||||| || | | ||||||||||| ||||| | | || | Sbjct 105072 CACTCGTCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCATTATTCTCC 105013 Query 145949 ACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCT--TTGC 146006 || | || ||| || | || || | |||||| ||||| | | ||| | |||| ||| Sbjct 105012 ACCCTCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAAAAGGTCCCTCGCTCGCTGC 104953 Query 146007 AATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTATAGATGTCCGCGTGCCACG 146066 || || ||| |||| ||||| | || | | | | || ||||| | Sbjct 104952 --TCTTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAATGCCAGG 104895 Query 146067 GTTCAATATAGACGGCGAGGGCTCC---TTTTCGTTTGCCACCCTGGTCCACGTGACGTA 146123 | || | || | ||||| |||||| | || ||||| |||||||| |||| |||| Sbjct 104894 GCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCCCCCTGGTCGACGTAACGTG 104835 Query 146124 CCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGT---AG 146180 | ||||||| |||| | || |||||| ||| || ||| |||||| || || Sbjct 104834 CAGTGTTGTTGTAGACCCTCAGCATGGGGACGAGCCCATTGGAGCAGCCGTTGGTGCCAG 104775 Query 146181 AGTTTATTCTGGTGCCGCGGGAGCGCACGCA-ATGAACATTCACGCCGAGACCGCCGCCG 146239 | || | | || || | | ||| ||| | | || |||| |||||| | Sbjct 104774 CG---ATGTAGCTCCCTGTTGATCTGATGCAGCTGACCGCT-ACRCCGATTCCGCCGGCC 104719 Query 146240 TACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCGTCAATGCTATCG--C 146297 | ||||| || |||||| | || || ||||||||||| || ||||| ||| | Sbjct 104718 GATTTGGAGATGAGGGCGCATTGCTTCAGTGTGTCGTAGATGCCCTCGATGCTGTCGTCC 104659 Query 146298 TTCGAATGCCGAGCAGAAAGCA-CGAGCACATCTGCGCCATCGGCGTCCCCGCCGAGAAC 146356 ||| || | ||||| ||||| | || ||| ||| | | | || || || ||| Sbjct 104658 TTC--ATTGCAAGCAGGAAGCAGCTAG-ACAGCTGTGGCCTGTTGGTTCCAGCATTGAAG 104602 Query 146357 AACGTCGGGCTCGCGTGCGT-AAACATTTTTCGGCTCATCATCCGATACGTTTCGATAGC 146415 | || || ||||| || || || || || | || || || || ||||| || Sbjct 104601 AGGGTTGGAGAGGCGTGGGTGAACCACTTCTCCG-ACAGCAGGTTGTAGGTCTCGATGGC 104543 Query 146416 GTCTTGAATGT-CGTCGCCATGAATGCCCAAAGCGACGCGCATGAGCATGTGTTGGGGCC 146474 | | || | |||| || || || |||| || || | ||||||||||||||| |||| Sbjct 104542 TGCGTCGATATCCGTC-CCGTGGATTCCCACGGCCACTCTCATGAGCATGTGTTGCGGCC 104484 Query 146475 GCTCCGCCACTTGATTGTCAATCTTTAACAAATAGCCGTTCTCCAGGGTTTTGTATCCGA 146534 |||| ||||| | |||||||||| | || ||| | |||||| || ||| | |||| Sbjct 104483 GCTCAGCCACCTTGCTGTCAATCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCGA 104424 Query 146535 AAAATTTGTA 146544 | || ||||| Sbjct 104423 AGAAGTTGTA 104414 >seq33 Length=2144867 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | | |||||| || | || | ||| |||||||| || |||||||| || Sbjct 1190739 GCCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1190680 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| || |||| | | ||||||||| ||||| Sbjct 1190679 CAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGG 1190620 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| |||||| ||| | | || | || ||| ||| ||| | Sbjct 1190619 AATGCCTTCTTTGTCCTGGATTTTGGCCTTTACATTTTCAATTGTGTCGCTGGGCTCAAC 1190560 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || ||||| || || |||||||| Sbjct 1190559 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 1190512 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || ||| || || | || | ||| |||||||| || |||||||| || Sbjct 1213480 GCCACCCCTCAGACGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1213421 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||| || || ||||||||||| ||| |||| | | ||||||||| || || Sbjct 1213420 CAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGG 1213361 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| |||||| ||| | | ||| | || ||| ||| ||| | Sbjct 1213360 AATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAAC 1213301 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || ||||| |||||||| Sbjct 1213300 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 1213253 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | |||||| || | || | ||| |||||||| || |||||||| || | Sbjct 1190510 CCACCCCTGAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1190451 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | | ||||||||| || || Sbjct 1190450 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 1190391 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| |||||| ||| | | || | || ||| ||| ||| | Sbjct 1190390 ATGCCCTCCTTGTCCTGGATTTTGGCCTTTACATTTTCAATTGTGTCGCTGGGCTCAACC 1190331 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || || |||||||| Sbjct 1190330 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 1190284 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 |||||| || | || | ||| |||||||| || |||||||| || || |||||| Sbjct 1190955 ACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCC 1190896 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 || || ||||||||||| ||| |||| | | ||||||||| || || || || || || Sbjct 1190895 ATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTT 1190836 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 || ||| || || | | ||| | || || ||| ||| | || | ||| | Sbjct 1190835 ATCCTGGATCTTAGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGAT 1190776 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 ||| || || || || ||||| || || ||||||||| Sbjct 1190775 GGTCTTGCCAGTGAGGGTTTTCACRAAGATCTGCATG 1190739 >seq34 Length=1455329 Score = 105 bits (116), Expect = 6e-18 Identities = 102/131 (78%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| | |||||| || | ||| | |||||| |||||||||| |||||||||||||||| Sbjct 919613 TGTACTCTACGATTTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGAT 919672 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 | || ||||||||||| || |||||||| ||||| || || ||||| || ||||| Sbjct 919673 TGCTCTTCCTGTTGCAGGCATCCTTGTAAAGCATATATGGCGTACCAGTTTCTGTCTGCG 919732 Query 145788 TCTCCACGATA 145798 || | |||| Sbjct 919733 ATTCAATGATA 919743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471973640638080