Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1647 134 9e-27 seq1794 127 1e-24 seq1829 122 6e-23 seq2881 111 1e-19 seq2158 107 1e-18 seq823 100 2e-16 seq1306 91.5 1e-13 seq321 87.8 1e-12 seq33 84.2 1e-11 >seq1647 Length=1490426 Score = 134 bits (148), Expect = 9e-27 Identities = 133/172 (77%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || | ||| || || ||||||||||||||||| ||||||||| |||||||| Sbjct 311100 ACCCGACCAAGTTTTTTGGTTGTGAACTTGGCGCTCAGACCCAGTTTGATACCAAAAACG 311041 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || | |||||| |||||||| || | | |||| |||||||| | ||||| || | Sbjct 311040 ATCGTTACATCGTCAACGGATCCCACGAGGCGAACAAGTTGCAGGACATGCTTGATGGGT 310981 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || | || ||||||||||||| || || |||||||| || || || || Sbjct 310980 TCATCAGAAAATTTGTGCTGTGTCCTGAGTGTGATAACCCTGAAACTGATCT 310929 >seq1794 Length=89003 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| || ||||| || |||||||| Sbjct 88863 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAGCTAGGGACAGTGGGAATCTCGT 88804 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 88803 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 88769 >seq1829 Length=67003 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||| || ||||| || |||||||| Sbjct 44426 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGCAGCTAGGGACAGTGGGAATCTCGT 44367 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| || ||||||||||||||||||||||||| Sbjct 44366 TCATCCATTAATGCGCGTCACTAATTAGATGACGA 44332 >seq2881 Length=5659 Score = 111 bits (122), Expect = 1e-19 Identities = 76/86 (88%), Gaps = 5/86 (6%) Strand=Plus/Minus Query 25911 CCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTT 25965 |||||||||||||||||||||||||| || ||||| || ||||||||| |||| || Sbjct 5659 CCCTTGGCTGTGGTTTCGCTAGATAGCAGCTAGGGACAGTGGGAATCTCGTTCATCCATT 5600 Query 25966 CATGCGCGTCACTAATTAGATGACGA 25991 |||||||||||||||||||||||||| Sbjct 5599 CATGCGCGTCACTAATTAGATGACGA 5574 >seq2158 Length=16997 Score = 107 bits (118), Expect = 1e-18 Identities = 77/89 (87%), Gaps = 5/89 (6%) Strand=Plus/Plus Query 25908 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCC 25962 |||||||||||||||||||| |||||||| || ||||| || ||||||||| |||| Sbjct 7560 GTTCCCTTGGCTGTGGTTTCACTAGATAGCAGCTAGGGACAGTGGGAATCTCGTTCATCC 7619 Query 25963 TTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||||| |||||||||||||||||||| Sbjct 7620 ATTCATGCACGTCACTAATTAGATGACGA 7648 >seq823 Length=129150 Score = 100 bits (110), Expect = 2e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||| ||||||||||||| | ||||||||||| |||||||||||| Sbjct 21298 CTCTCTCTTCAAAGTTCTCTTCAACTTTCCCTTATGGTACTTGTTCTCTATCGGTCTCGT 21357 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||| ||| Sbjct 21358 GCCAGTATTTAGCYTTA 21374 >seq1306 Length=1119290 Score = 91.5 bits (100), Expect = 1e-13 Identities = 76/93 (82%), Gaps = 5/93 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| |||||||||||||||| | ||||||||| || || || || |||||| | Sbjct 768513 AAGCCTGTTCCCTTGGCTGTGGATCTGCTAGATAGCAGCTAAGGACAGTGGGAATCTCAT 768454 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGAC 25989 | |||| ||||||| |||||||||||||||||| Sbjct 768453 TTATCCATTCATGCACGTCACTAATTAGATGAC 768421 >seq321 Length=583724 Score = 87.8 bits (96), Expect = 1e-12 Identities = 77/95 (81%), Gaps = 7/95 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||| ||||||| |||||||| || ||||| || |||||||| Sbjct 125595 AAGCCCATTCCCTTGGCTATGGTTTCACTAGATAGCAGGTAGGGACAGTGGGAATCTCGT 125536 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | ||| ||||||| ||||||||| | ||||||| Sbjct 125535 TCATCTATTCATGCCCGTCACTAAGT--ATGACGA 125503 >seq33 Length=2144867 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| |||| ||| | |||| || || ||| |||||| || || ||||| |||||| Sbjct 1213479 CCACCCCTCAGACGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1213420 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | || || || || || || || | || || || | ||| Sbjct 1213419 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 1213360 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||||||| ||||| ||||||||||| | || || | ||||| Sbjct 1213359 ATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 1213300 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || | || || || || || || | ||| || ||||| |||||||| ||| Sbjct 1213299 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATCTTT 1213249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334920106644347