Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1696 563 1e-155 seq34 100 4e-16 seq1698 96.9 4e-15 >seq1696 Length=952724 Score = 563 bits (624), Expect = 1e-155 Identities = 1315/1975 (67%), Gaps = 21/1975 (1%) Strand=Plus/Minus Query 62098 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62157 |||||||||||| | | || || | | ||||| || || || |||| | | || Sbjct 105988 CTGAATGGATCCGCTGTGAGCAATCAGCTGGTTCTTCATGTCCTCGCTCCACAGTCCCCT 105929 Query 62158 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62217 ||| || | || | || || || || || || | ||||| ||||| |||| || || Sbjct 105928 CTCCGTCAGGTCTTTGAGCAGGTGAGGGTTGACGATCTGAAACTCTCCTGACAGCACCCT 105869 Query 62218 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 62277 || ||||| || || ||||| || | || | ||||| || || |||| || || || Sbjct 105868 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 105809 Query 62278 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62337 || || || || ||||| || |||| || | || || || | |||| | | || Sbjct 105808 GGTGGAGGCCGTTGGCATTGGAGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAC 105749 Query 62338 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTA-CAACNNNNNNNNNNNNNN 62396 || || || || | | ||| | ||| || |||| || | | Sbjct 105748 CTTCTCCTTCAGCGCCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCTTCCACATGTCGTA 105689 Query 62397 NTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCT 62456 | | ||| | || |||||| | || ||| | || || ||||| || || | | Sbjct 105688 CTGGAAGA-TGCCCTTACTGACCGGGGAACCTTCGTACGTCTCGTAGGGGCCGTGTTCGG 105630 Query 62457 CAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTAT 62516 | |||| |||||||||||||| | ||| |||| |||||||| || ||||| | | | Sbjct 105629 CGGCTAACTCACAACTCGCCTCCAGAGCAGCGTAGTAAATGGTCTCAAAGATTTGGATGT 105570 Query 62517 TTAGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 62576 | || || || || |||| |||||||||||| | || ||||| ||||| || | Sbjct 105569 TGAGCAGCTGAGCCTCAGGGCTTTCAAATGGATAACGCATCAGGATAAAGGCGTCAGCCA 105510 Query 62577 ATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAA 62636 ||||||| || ||||| || || || || || | | ||||||| | | || ||| | Sbjct 105509 ATCCTTGGACTCCAATTCCTATTGGCCTGTGGCGCATATTAGACCTCTTGGCCTCTTCCA 105450 Query 62637 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACAT 62696 || || || || || || ||||| || || | |||||||||||||||||| |||| Sbjct 105449 CTGGGTAGTAGTTTATGTCGATAATCTTGTTTAAGTTTCTGACAATTACTTTGGTCACAG 105390 Query 62697 CCTTCAGTTTGAGAAAATCAAAT---CGCCCATCTATTACAAACATGTTCAATGCAACAG 62753 |||||| ||| ||| | ||| || | | || ||||||| | || | | Sbjct 105389 ATGCCAGTTTTTTAAAGTCATAAGTCCGCTCAGGTGTGACGTACATGTTGAGAGCGATGG 105330 Query 62754 ATGCCAGATTACAAACGGCTACCTCATTAGCATCC--GCATATTGTATTATCTCAGTGCA 62811 | |||||||| || || || ||||| | | | | | |||| | || || ||||| Sbjct 105329 AGGCCAGATTGCAGACAGCCACCTCGTC--CTTGCTGGTGTATTCGACGATTTCTGTGCA 105272 Query 62812 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 62871 || || || ||||||||||| || | ||| || || || ||||| |||| || || || Sbjct 105271 GAGGTTGCTGCACTTGATGGTCCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCRTC 105212 Query 62872 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 62930 || || || ||| | || || |||||||| |||| || || || || || | ||| | Sbjct 105211 TTTGTACAGCATGTACGGCGTCCCAGTTTCTGTCTGTGACTCAATGATGGCGTACCACAG 105152 Query 62931 CGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATC 62990 | || ||||||| | | | ||| ||| || | |||||| || || | Sbjct 105151 CTGCT-GAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCGTATCTGGTGTAGAGCT 105093 Query 62991 GTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACG 63050 || ||||| || ||||| | |||||| || || || || |||||||||||| | Sbjct 105092 CCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCAGTCGGCCGGACACATCAGGG 105033 Query 63051 ACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATA 63109 |||| ||| | | || || ||| | ||||| ||||| ||||| ||||| || || || | Sbjct 105032 ACCAGTCTTCATTATTCTCCACCCTCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGA 104973 Query 63110 AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCC 63169 || || || || | || || || || ||||| || ||||| || || || ||||| | Sbjct 104972 AA-AGGTCCCTCGCTCGCTGCTCTTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCA 104914 Query 63170 ATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCT 63229 | | |||| ||||||| || |||| ||| ||||| | |||| || | |||||| || Sbjct 104913 AACACATCAAAATGCCAGGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCC 104854 Query 63230 CCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTG 63289 ||||| || | ||| | || ||||| || || || |||| ||| || | | |||||| Sbjct 104853 CCCTGGTCGACGTAACGTGCAGTGTTGTTGTAGACCCTCAGCATGGGGACGAGCCCATTG 104794 Query 63290 GATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGA 63349 || || ||||| || | ||| ||||| || | | | || || | | || Sbjct 104793 GAGCAGCCGTTGGTGCCAGCGATGTAGCTCCCTGTTGATCTGATGCAGCTGACCGCTACR 104734 Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409 || ||||| || ||| ||| ||||| | |||||| | || | || || ||||||||| Sbjct 104733 CCGATTCCGCCGGCCGATTTGGAGATGAGGGCGCATTGCTTCAGTGTGTCGTAGATGCCC 104674 Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 63469 || || || || ||| |||| ||| || || |||||||||| || | | | ||| Sbjct 104673 TCGATGCTGTCGTCCTTCATTGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTGGTT 104614 Query 63470 CCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTAC 63529 || ||||| || | ||| ||||| ||||| || ||||| || || || || || ||||| Sbjct 104613 CCAGCATTGAAGAGGGTTGGAGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAG 104554 Query 63530 GTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATG 63589 ||||| || |||| ||| |||||| || ||||| || || || | ||| | |||| Sbjct 104553 GTCTCGATGGCTGCGTCGATATCCGTCCCGTGGATTCCCACGGCCACTCTCATGAGCATG 104494 Query 63590 TGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 63649 || || || | ||| | | |||| ||| || |||| || |||||| |||| ||| Sbjct 104493 TGTTGCGGCCGCTCAGCCACCTTGCTGTCAATCTTCAGCAGGTAGGAGCGCTCCAGAGTC 104434 Query 63650 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTA 63709 || || || || ||||||| || || |||| ||||| || || |||||||||| Sbjct 104433 TTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGTCGTAGATTATGGCCGAGTTGAGGCGG 104374 Query 63710 TCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATAGGAAAAT---GTTTC 63766 ||||| | | | ||| || || | || | ||||| || || | | |||| Sbjct 104373 TCCTTGTTTGCGAGAACAACCTCGAGCGTCTCTTTCGAAATCATGGGGGAGTGGCGTTT- 104315 Query 63767 CCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 63826 || ||| |||| ||||| | | |||||||| || || || || | ||| || Sbjct 104314 --GTTCAAAGGGTTGATGTAGTTATACAGGTCCTCCATGACATCGCTGAACACTTTCTTC 104257 Query 63827 GTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGATGT 63886 || |||||||| || || || ||||| || | || || || ||||| || || || | | Sbjct 104256 GTCTCTTTGTGCAGGTTGGAGACGGCGATGCGTGCAGCGAGGATGGCGTAGTCGGGGTAT 104197 Query 63887 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACA 63946 | || || |||||| || || || || ||||| ||||| | || || || || || Sbjct 104196 TTGGTGGTGAGAGTGGCAGCAATCTCTGCCGCCAGTGTGTCGAGCTCCACGGTGGTGACC 104137 Query 63947 CCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTG 64006 || | || | || ||||| |||||||||| || | || || | | || | Sbjct 104136 CCGCTGTACAAACCCTGGATCACCTTCATAGTGATCTGGGCTGGGTCAACAAACTCCAAG 104077 Query 64007 TTTAAGCCATAACATAATTTTCT-AATACGAGATGTGATTTTATCAAACATGACA 64060 || | ||||| || || |||| |||||||| ||||||||||||||||||||| Sbjct 104076 TTCAGCCCATAGCA-AAGCTTCTGGATACGAGAGGTGATTTTATCAAACATGACA 104023 Score = 89.7 bits (98), Expect = 7e-13 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| || || || ||||| || || || ||| || |||| || ||||| ||||| | Sbjct 106651 TCCAGCCATAGAAGTGCATGCTGGTAAGCTTGCCGTAGTTCGGCTCGGCTATGTGGATGT 106592 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 ||| ||| || || || ||||||||||| || | ||| || ||||| || | | || | Sbjct 106591 TCAGAGACTGGCTCTGGTCGATGAAGGCGCCACGGTCAGCGGCCATCTTGAGTACTGTTT 106532 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGG 62085 | || | || ||||| | ||||||||| | |||| | ||| ||||| Sbjct 106531 TCTGGGAGATCTCCCACACAGTTTTATACAGCTGCTTCAAATCATCTGG 106483 >seq34 Length=1455329 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 || || || ||||| | ||||||||||| ||||| ||||| || || || || | ||| Sbjct 923299 GTGCCAGCGTTAAACAGTGTAGGAGAAGCATGAGTGAACCACTTCTCTGACAGCAAGTTG 923358 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 || |||||||| |||| || || || | || |||||| || |||| || | ||||| | Sbjct 923359 TAGGTCTCAATGGCTGCATCAATGTCTCCTTTATGAATCCCGACTGACACTCTCATTAGC 923418 Query 63587 ATGTGCTGAGGTCTTTCA 63604 |||||||| ||||| ||| Sbjct 923419 ATGTGCTGGGGTCTCTCA 923436 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 || || ||||| ||||| || | |||||||| || | |||||| ||||| ||||| || Sbjct 919624 ATTTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTGCTCTTCCTG 919683 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAAT 62919 || || |||||||| ||||| || |||| ||||||||||| |||| ||||| || || Sbjct 919684 TTGCAGGCATCCTTGTAAAGCATATATGGCGTACCAGTTTCTGTCTGCGATTCAATGAT 919742 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| |||| ||| || || |||||||| || || || || || || | || || || Sbjct 924832 CACTGAATACTTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCAATGCGTGCAGCCAGGC 924891 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | ||||| || ||||||| || || ||||| || | || |||||||||||||| | Sbjct 924892 TTGCATAGTCTGGATGTTTAGTGGTGAGGGTGGCAGCAGTCTCTGCTGCCAGAGTGTCTA 924951 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 || || || || || ||||| || | || ||||| |||||||| Sbjct 924952 GCTCCACTGTGGTGACTCCATTGTACAGACCCTGGATCACCTTCAT 924997 >seq1698 Length=2458952 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 ||||||| || ||||| | |||||||| | || ||||| ||||||||||| | ||| | Sbjct 826487 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGTCCAGGCATTAGGCCCCTCTTCT 826428 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | | ||| | || | |||||||| ||||| |||||||| || || || || ||||| | Sbjct 826427 TTAACCAGTAGATAGCAGCAAATGAACCAGAGAAGAAAATGCCCTCCACAGCTGCAAAAG 826368 Query 32803 CAATAAGTCTCTCTCC 32818 | | || |||||| || Sbjct 826367 CCACAATTCTCTCCCC 826352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633579432305200