Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq33 100 2e-16 >seq33 Length=2144867 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || ||||||| | || || ||| | Sbjct 1213253 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 1213312 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||| |||||| ||||||||||||||||| |||||||| Sbjct 1213313 GACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGGATTCCCCCTGACCAG 1213372 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || || || ||||| || | ||||||| |||||| || || ||||| Sbjct 1213373 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTGTCTGACTACAAC 1213432 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 1213433 ATCCAGAAGGAGTCCACCCTCCA 1213455 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || || ||| | Sbjct 1190284 ATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 1190343 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| |||||| ||||| || || ||||| |||||||| Sbjct 1190344 GACACAATTGAAAATGTAAAGGCCAAAATCCAGGACAAGGAGGGCATTCCCCCTGACCAG 1190403 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||||| || || ||||| Sbjct 1190404 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 1190463 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 1190464 ATCCAGAAGGAGTCCACCCTCCA 1190486 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || || || ||||||| | || || ||| | Sbjct 1190512 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 1190571 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| |||||| ||||||||||| ||||| || ||||| Sbjct 1190572 GACACAATTGAAAATGTAAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCCGACCAG 1190631 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||||| || || ||||| Sbjct 1190632 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 1190691 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || ||||| || || Sbjct 1190692 ATCCAGAAGGAGTCCACCCTCCA 1190714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433292948775155