Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq33 111 1e-19 seq1696 102 7e-17 >seq33 Length=2144867 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 22201 TTTTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACT 22260 ||||| | | || ||||||||| || ||||| || || | || || || || |||| Sbjct 1190266 TTTTACATAGGTGCAAAGATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACC 1190325 Query 22261 CTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAG 22320 || || || || ||| ||| || | || || | || ||||| || ||||||||| Sbjct 1190326 CTGGAGGTTGAGCCCAGCGACACAATTGAAAATGTAAAGGCCAAAATCCAGGACAAGGAG 1190385 Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 || ||||| || || || || | || || ||||||||||| ||| | || ||| |||| Sbjct 1190386 GGCATTCCCCCTGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGC 1190445 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 ||| | || || |||||||| || || || |||||| Sbjct 1190446 ACCCTGTCTGACTACAACATCCAGAAGGAGTCCACC 1190481 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || || |||| || || || || ||| | Sbjct 1190512 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 1190571 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || ||||| || ||||| || || ||||| ||||| || Sbjct 1190572 GACACAATTGAAAATGTAAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCCGACCAG 1190631 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||||||||| ||| | || ||| ||||||| | || || |||||| Sbjct 1190632 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 1190691 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || |||||| Sbjct 1190692 ATCCAGAAGGAGTCCACC 1190709 >seq1696 Length=952724 Score = 102 bits (112), Expect = 7e-17 Identities = 360/557 (65%), Gaps = 11/557 (2%) Strand=Plus/Minus Query 129296 TCCAGTCCCACATCGATGTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAAC 129355 |||||||||||| || || || | ||||||| |||||| || || || ||| || Sbjct 105731 TCCAGTCCCACAGGTCCGTTGGCGTCTTCTTCCACATGTCGTACTGGAAGATGCCCTTAC 105672 Query 129356 TGGCGGGACTGGAAAA---GTAGGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAAC 129412 || | || |||| ||| | |||| ||||| | || || || |||| Sbjct 105671 TGACCGG---GGAACCTTCGTACGTCTCGTAGGGGCCGTGTTCGGCGGCTAACTCACAAC 105615 Query 129413 TCGCTTCCAATGCGCCAAAATAAATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCT 129472 |||| |||| || | | ||||| || || |||| | |||| | || | |||| Sbjct 105614 TCGCCTCCAGAGCAGCGTAGTAAATGGTCTCAAAGATTTGGATGTTGAGCAGCTGAGCCT 105555 Query 129473 GGTCGCTTTCGTACGGCATACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCA 129532 |||||| | || ||||| || | ||| | ||| ||||| ||||| | || | Sbjct 105554 CAGGGCTTTCAAATGGATAACGCATCAGGATAAAGGCGTCAGCCAATCCTTGGACTCCAA 105495 Query 129533 CACCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGA 129592 || || || | || |||| || | | ||| || || |||||||| | Sbjct 105494 TTCCTATTGGCCTGTGGCGCATATTAGACCTCTTGGCCTCTTCCACTGGGTAGTAGTTTA 105435 Query 129593 TGTCTATAATTTTGTTTAAATTCTTGACCACAATTTTCGTTACGTATTTTAACATTTCAA 129652 |||| ||||| |||||||| || |||| | | ||| || || || | ||| || Sbjct 105434 TGTCGATAATCTTGTTTAAGTTTCTGACAATTACTTTGGTCACAGATGCCAGTTTTTTAA 105375 Query 129653 AATTGTAC-TCGCCTACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTG 129711 | | || || || || | ||| ||| | |||| | || ||||||| |||| Sbjct 105374 AGTCATAAGTCCGCT-CA--GGTGT-GACGTACATGTTGAGAGCGATGGAGGCCAGATTG 105319 Query 129712 CAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTT 129771 ||||| || |||| ||| |||| ||||| ||||| | ||| | || || Sbjct 105318 CAGACAGCCACCTCGTCCTTGCTGGTGTATTCGACGATTTCTGTGCAGAGGTTGCTGCAC 105259 Query 129772 TTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATG 129831 || ||||| |||| || || || || || ||| ||||||| || |||||||||| |||| Sbjct 105258 TTGATGGTCCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCRTCTTTGTACAGCATG 105199 Query 129832 TACGGCGTGCCCGTTTC 129848 |||||||| || ||||| Sbjct 105198 TACGGCGTCCCAGTTTC 105182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419694048857905