Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1696 102 2e-16 seq830 95.1 2e-14 seq953 91.5 3e-13 seq799 91.5 3e-13 seq667 91.5 3e-13 seq389 91.5 3e-13 seq42 91.5 3e-13 seq1 91.5 3e-13 seq1473 89.7 1e-12 seq1357 89.7 1e-12 seq820 89.7 1e-12 seq1585 87.8 4e-12 seq974 87.8 4e-12 >seq1696 Length=952724 Score = 102 bits (112), Expect = 2e-16 Identities = 226/337 (67%), Gaps = 2/337 (1%) Strand=Plus/Minus Query 293907 CTCCTCCTTCGAGGTGTACTCGACAATCTCAGCACAGAGGTTACTGCCCTTGATGGTGCC 293966 ||| ||||| |||||| ||||| || || | |||||||| |||| ||||||||| || Sbjct 105307 CTCGTCCTTGCTGGTGTATTCGACGATTTCTGTGCAGAGGTTGCTGCACTTGATGGTCCC 105248 Query 293967 CGCATTAGACTGCATGTTCTTGGCATTGACACTGTCTTTGTTGAGGACATATGGCATACC 294026 | ||| ||| || |||| ||| ||||||| || | || ||| | || Sbjct 105247 CAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCRTCTTTGTACAGCATGTACGGCGTCCC 105188 Query 294027 CGTTTCAATCTGAGTGGTGACCATGGTGTTCCAGACATCGCGAGCCTTCACCACGCGCTT 294086 ||||| |||| | | |||| || ||| | | ||||||||||||| ||||| Sbjct 105187 AGTTTCTGTCTGTGACTCAATGATGGCGTACCACAGCTGCTGAGCCTTCACCACACGCTT 105128 Query 294087 TGCCTTCCCCTCAGACTCATACTTGGTGTAAAGCTCTTCGTATTCCTTGCCATATACATC 294146 || ||||||| ||| || ||||||| ||||| || | |||| || | || Sbjct 105127 GACCCTCCCCTCCTTCTCGTATCTGGTGTAGAGCTCCTCAAACTCCTCCCCCCAGCACTC 105068 Query 294147 AGACAGGCCAGGGCACTCGTGAGGGTCA-AGTAGAGACCACTGGGCATCAGTCTCCACGC 294205 ||| || ||||| ||| | || || | || ||||| | ||| | ||||||| | Sbjct 105067 GTCCAGCCCGGGGCAGTCG-GCCGGACACATCAGGGACCAGTCTTCATTATTCTCCACCC 105009 Query 294206 GCTTCATGAATAGATCATTGACCCACATTGCGTaaaa 294242 ||||||||| || ||| || ||||| ||||| || Sbjct 105008 TCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAA 104972 >seq830 Length=325949 Score = 95.1 bits (104), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 ||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 318331 ATAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCG 318390 Query 142561 AGCCCCACATCGGGC 142575 |||||||| | |||| Sbjct 318391 AGCCCCACGTTGGGC 318405 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 186599 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 186540 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 186539 CCCCACGTTGGGC 186527 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 318810 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 318751 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 318750 CCCCACGTTGGGC 318738 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||| ||| Sbjct 317574 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTYGAG 317633 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 317634 CCCCACGTTGGGC 317646 >seq953 Length=2868102 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 102088 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 102029 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 102028 CCCCACGTTGGGC 102016 >seq799 Length=1933760 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 877151 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 877092 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 877091 CCCCACGTTGGGC 877079 >seq667 Length=4156891 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 2045612 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 2045671 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 2045672 CCCCACGTTGGGC 2045684 >seq389 Length=3351847 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 1704127 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 1704186 Query 142562 GCCCCACATCGGG 142574 ||||||| | ||| Sbjct 1704187 GCCCCACGTTGGG 1704199 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1700115 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1700174 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1700175 CCCACGTTGGGC 1700186 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1701039 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1701098 Query 142563 CCCCACATCGGG 142574 |||||| | ||| Sbjct 1701099 CCCCACGTTGGG 1701110 >seq42 Length=2091956 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1821700 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 1821759 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 1821760 CCCCACGTTGGGC 1821772 >seq1 Length=1749755 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 141467 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 141408 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| | |||| | ||| Sbjct 141407 CCCACGTTGGGCGGCAGT 141390 >seq1473 Length=1704451 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 42556 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 42615 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 42616 CCCACGTTGGGC 42627 >seq1357 Length=1100848 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 1090171 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 1090230 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 1090231 CCCACGTTGGGC 1090242 >seq820 Length=872149 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 762061 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 762120 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 762121 CCCACGTTGGGC 762132 >seq1585 Length=279283 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Minus Query 142048 CGCATGTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGT 142106 |||| ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||| Sbjct 106029 CGCA-GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGT 105971 Query 142107 TCGACCCCCGCCAGAGA 142123 |||| |||| |||||| Sbjct 105970 TCGAGTCCCGGCAGAGA 105954 >seq974 Length=1203455 Score = 87.8 bits (96), Expect = 4e-12 Identities = 73/87 (84%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 ||||||||||||||||||| |||||| ||||||||||||||| ||| | ||||||||| Sbjct 836596 GTCTCTGTGGCGCAATGGAATAGCGCGCTGGACTTCTAATCCAGAGGCTCCGGGTTCGAG 836537 Query 142112 CCCCGCCAGAGACGCCAGGATGTGTGA 142138 |||| |||||| | |||||| ||| Sbjct 836536 TCCCGGCAGAGATG--TGGATGTATGA 836512 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027749396291717