Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1605 190 4e-43 seq33 165 2e-35 seq913 93.3 8e-14 seq173 84.2 4e-11 >seq1605 Length=404251 Score = 190 bits (210), Expect = 4e-43 Identities = 180/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 |||||||| || ||||||| |||| ||| || |||||||| || |||||||| || ||| Sbjct 108205 TTTCCTCCACGGAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 108264 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 || || || | |||||||| | |||||| || ||||| ||||| || || ||||| || Sbjct 108265 GACAGGGTGCGGCCATCTTCCAGCTGCTTTCCTGCGAAGATGAGCCTCTGCTGGTCAGGA 108324 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 || ||||| || ||||| || ||||| ||||| || ||| |||||||| | || Sbjct 108325 GGGATGCCCTCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCC 108384 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||| ||||||||| || ||||| ||||||||||| || |||||||| Sbjct 108385 ACTTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 108434 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378 || || || || ||||| || || ||||| || || ||||||||||| || || ||||| Sbjct 108729 TTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTA 108788 Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438 ||||| || ||| |||||||| | || || |||| ||||||||| || || || Sbjct 108789 GCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 108848 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 ||||||||||| || |||||||| Sbjct 108849 AGGGTCTTGACAAAGATCTGCAT 108871 >seq33 Length=2144867 Score = 165 bits (182), Expect = 2e-35 Identities = 164/210 (78%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || |||||||| || |||||||| || || || || || | |||||||| Sbjct 1213461 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCTTCC 1213402 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| || ||||| || || || || ||||| || ||||| ||||| ||||| || Sbjct 1213401 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATCCCTTCTTTGTCCTGG 1213342 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGTGATGGTTTT 68431 || || ||||| || ||| |||||||| |||| || || |||| ||||||||| || Sbjct 1213341 ATTTTGGCCTTCACATTCTCAATGGTGTC-GCTGGGCTCAACCTCCAGGGTGATGGTCTT 1213283 Query 68432 TCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || ||||||||||||||||| |||||||| Sbjct 1213282 GCCAGTGAGGGTCTTGACGAAGATCTGCAT 1213253 Score = 158 bits (174), Expect = 2e-33 Identities = 168/219 (77%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| |||| ||| || |||||||| || |||||||| || || || || || | Sbjct 1190501 AGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGG 1190442 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| ||||| || || || || || ||||| || |||||||| ||| Sbjct 1190441 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCC 1190382 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTACTTCCAAGGT 68422 ||||| || || || ||||| || || || ||||| |||| || || |||| ||| Sbjct 1190381 TTGTCCTGGATTTTGGCCTTTACATTTTCAATTGTGTC-GCTGGGCTCAACCTCCAGGGT 1190323 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || |||||||||||||| || |||||||| Sbjct 1190322 GATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 1190284 Score = 149 bits (164), Expect = 1e-30 Identities = 166/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || |||| || | ||| || |||||||| || |||||||| || || || || || | Sbjct 1190729 AGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGG 1190670 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 |||||||| | |||||| ||||| || || || || || |||||||| ||||||||||| Sbjct 1190669 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCT 1190610 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTACTTCCAAGGT 68422 ||||| || || || ||||| || || || ||||| ||| | || || |||| ||| Sbjct 1190609 TTGTCCTGGATTTTGGCCTTTACATTTTCAATTGTGTC-GCTGGGCTCAACCTCCAGGGT 1190551 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||| || || |||||||| || || || |||||||| Sbjct 1190550 GATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 1190512 Score = 86.0 bits (94), Expect = 1e-11 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || || ||||| ||||| || ||| |||||||| | || || Sbjct 1213587 ATGCCCTCCTTATCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 1213528 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || |||||||||||||| || |||||||| Sbjct 1213527 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 1213481 >seq913 Length=88738 Score = 93.3 bits (102), Expect = 8e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||||||| | |||||||||| ||||| |||||||||||||| ||| ||||| Sbjct 62467 CATGACGCCCATCCTCTGGTACTCGCCCACCCGCTTCTCGAAGAAGTTGGTCTTTCCCTC 62408 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 || || ||| |||||||||||| ||||||||||| Sbjct 62407 CAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTCTC 62372 Score = 93.3 bits (102), Expect = 8e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||||||| | |||||||||| ||||| |||||||||||||| ||| ||||| Sbjct 71972 CATGACGCCCATCCTCTGGTACTCGCCCACCCGCTTCTCGAAGAAGTTGGTCTTTCCCTC 72031 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 || || ||| |||||||||||| ||||||||||| Sbjct 72032 CAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTCTC 72067 >seq173 Length=537686 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 ||||||||||| || ||||||||||| || || || ||||| | || ||||| Sbjct 457463 CCTTCCTTGTCCTGGATCTTTGCCTTTACATTTTCAATAGTGTCACTGGGCTCAACTTCA 457522 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||||||| ||||| || ||||| ||||| |||||||| Sbjct 457523 AGGGTGATGGTTTTCCCCGTCAGCGTCTTTACGAAGATCTGCAT 457566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921545939901640