Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq33 104 2e-17 seq1605 84.2 2e-11 >seq33 Length=2144867 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || || |||||| || || || || Sbjct 1190708 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 1190649 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| |||||||||||||||||||| || || ||| Sbjct 1190648 GCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTT 1190589 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||||| ||| || || |||| ||| | || ||||| || || ||| Sbjct 1190588 ACATTTTCAATTGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTT 1190529 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 1190528 TTCACAAAGATCTGCAT 1190512 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || ||| || |||||| || || || ||| Sbjct 1213449 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCTTCCAGCTGCTTGCCA 1213390 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| ||||| || ||||| ||||||||||| || || || Sbjct 1213389 GCGAAGATCAGCCTCTGCTGGTCAGGGGGAATCCCTTCTTTGTCCTGGATTTTGGCCTTC 1213330 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| ||| || || |||| ||| | || ||||| || || || Sbjct 1213329 ACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 1213270 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 1213269 TTGACGAAGATCTGCAT 1213253 >seq1605 Length=404251 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 || ||||| ||||||| | ||| ||||| ||||| |||||||| || || ||||| Sbjct 108729 TTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTA 108788 Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359 || | | |||| |||||| ||| || || |||| ||| | || ||||||||| Sbjct 108789 GCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 108848 Query 114360 AGAGTTTTTACAAAAATCTGCATGGCTTAA 114389 || || || ||||| |||||||| ||||| Sbjct 108849 AGGGTCTTGACAAAGATCTGCAT--CTTAA 108876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420100415984844