Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1696 518 6e-142 seq913 123 5e-23 seq455 89.7 1e-12 seq1698 87.8 3e-12 >seq1696 Length=952724 Score = 518 bits (574), Expect = 6e-142 Identities = 1093/1599 (68%), Gaps = 68/1599 (4%) Strand=Plus/Minus Query 244017 TGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC---AGCG 244073 |||| | || |||||| | ||||| ||| ||||||| ||| | |||| || Sbjct 105974 TGTGAGCAATCAGCTGGTTCTTCATGTCCTCGCTCCACAGTCCC---CTCTCCGTCAGGT 105918 Query 244074 CCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGA 244133 | | || |||||| ||| || | |||||||||||| |||||||| | ||| ||||| Sbjct 105917 CTTTGAGCAGGTGAGGGTTGACGATCTGAAACTCTCCTGACAGCACCCTGCGGGTGTAGA 105858 Query 244134 GGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAG 244193 ||||||| || | ||||||| ||| |||||||||| ||||| || ||| || | Sbjct 105857 TGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCG 105798 Query 244194 TCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC--T 244251 | ||||| || | || |||||| ||||||||||||||||| | ||| | || | Sbjct 105797 TTGGCATTGGAGCCAGCAGCAGGCTGTTCCTCACGCCGTG--TTTGGCGACCTTCTCCTT 105740 Query 244252 GAGCTCGTTCCAGTCCCACATGCCCGAGAG-GTCCTCGCGTTTGAGGCCCCACATGTCAA 244310 ||| | ||||||||||||| | ||| | ||| || || ||||||||| Sbjct 105739 CAGCGCCTTCCAGTCCCACAGGTCCGTTGGCGTCTTC----TT------CCACATGTCGT 105690 Query 244311 ACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCT 244370 |||| | | ||||| ||||| ||| || ||||| ||| |||||| |||| | | Sbjct 105689 ACTGGAAGATGCCCTTACTGACCGGGGAACCTTCGTACGTCTCGTAGGGGCCGT-GTTCG 105631 Query 244371 G-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTG 244429 | ||| | || ||| ||| | || || || |||||||| |||||||| ||||| ||| Sbjct 105630 GCGGCTAACTCACAACTCGCCTCCAGAGCAGCGTAGTAAATGGTCTCAAAGAT----TTG 105575 Query 244430 TTCATGTCGCGGGCCTT-GCCGCAGG----TGAAGGGGATGCC-CATCATCATGAAGACG 244483 |||| | | || ||| |||| | || |||| | ||||| || ||| || Sbjct 105574 G--ATGTTGAGCAGCTGAGCCTCAGGGCTTTCAAATGGATAACGCATCAGGATAAAGGCG 105517 Query 244484 TCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCT 244543 || |||| ||| || || || || || || || ||||| ||| | || || | | |||| Sbjct 105516 TCAGCCAATCCTTGGACTCCAATTCCTATTGGCCTGTGGCGCATATTAGACCTCTTGGCC 105457 Query 244544 TCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA-TGCG 244602 || ||| ||||| |||| |||||| | |||||| | ||| | | || | | | Sbjct 105456 TCTTCCACTGGGTAGTAGTTTATGTCGATAATCTTGTTTAAGTTTCTGACAATTACTTTG 105397 Query 244603 GACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCT 244662 | | || ||||| | |||||| || || || || |||| | Sbjct 105396 GTC-ACAGATGCCAGTTTTTTAAAGTCATA-----AG------TCCGCTCAGGTG----T 105353 Query 244663 CACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGT 244722 || || |||||| |||| | |||||| |||||||| |||||||| ||| | |||| Sbjct 105352 GACGTACATGTTGAGAGCGATGGAGGCCAGATTGCAGACAGCCACCTCGTCCTTGCTGGT 105293 Query 244723 GTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATT 244782 ||| | ||| || || ||||||||||| |||||||||||||| ||||| | ||| || || Sbjct 105292 GTATTCGACGATTTCTGTGCAGAGGTTGCTGCACTTGATGGTCCCCAGATTCTGCTGGTT 105233 Query 244783 GGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGC 244842 | ||| ||||||||| || ||||| |||||| | ||| ||| || || ||| | Sbjct 105232 GCTCTTCCTGTTGCAGGCRTCTTTGTACAGCATGTACGGCGTCCCAGTTTCTGTCTGTGA 105173 Query 244843 GACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAG-CCTTGCCCTCTG 244901 | | || | || ||| || | | |||||| ||| | || | || | ||||| Sbjct 105172 CTCAATGATGGCGTACCACAGCTGCTGAGCCTTCACCACAC-GCTTGACCCTCCCCTCCT 105114 Query 244902 CCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGC 244961 |||||| | |||||| || |||| ||||| |||||| |||||| || ||||||| Sbjct 105113 TCTCGTATCTGGTGTAGAGCTCCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGC 105054 Query 244962 ACGACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGT 245021 | ||||| ||||| || ||| || | | || ||||||| ||||||||||| Sbjct 105053 AGTCGGCCGGACACATCAGGGACCAGTCTTCATTATTCTCCACCCTCTTCATGAAGAGGT 104994 Query 245022 CGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCT 245081 | |||||||| ||||| | ||| |||||||| | | |||||| ||| || ||||||| Sbjct 104993 CAGGGATCCACAGGGCGTAGAAAAGGTCCCTCGCTCGCTGCTCTTCCTTTCCCGTGTTCT 104934 Query 245082 TCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGG 245141 || ||||||||| |||||||| || || | ||||||||||||| ||| | |||| || Sbjct 104933 TCTTCAGCTCCAGGAAGTCAAACACATCAAAATGCCAGGGCTCCAGGTACATGGCGAAGG 104874 Query 245142 CGCCGGGCCGCTTGTTGCCTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGC 245200 | ||||| | |||||||| |||||||| || | | | | | |||| ||| | | Sbjct 104873 CTCCGGGTCTTTTGTTGCCCCCCTGGTCGACGTAACGTGCAGTG-TTGTTGTAGACCCTC 104815 Query 245201 AGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCT-TGCC 245259 || | || || | || || ||| |||||||||||| |||||| || |||| | Sbjct 104814 AGCATGGGGACGAGCCCATTGGAGCAGCCGTTGGTGCCAGCGATGTA-GCTCCCTGTTGA 104756 Query 245260 CCTGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCT 245319 |||| | ||||| | | || | ||||||||| ||||||||||||||||| Sbjct 104755 TCTGATGCAGCTGACCGCTACRCCGATTCCGCCGGCCGATTTGGAGATGAGGGCGCATTG 104696 Query 245320 CTTGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGA 245379 ||| | ||||| |||||||| |||||||| |||||| ||||| |||||| Sbjct 104695 CTTCAGTGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATTGCAAGCAGGAAGCAGCT 104636 Query 245380 GGACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 |||||||| ||| || | | | | ||||| || || || ||||||||| || | Sbjct 104635 AGACAGCTGTGGCCTGTTGGTTCCAGCATTGAAGAGGGTTGGAGAGGCGTGGGTGAACCA 104576 Query 245440 GCGGCT-CGAGAGGAACCCGTACGTCTGGAGCAGAGCGTCGATGT-TGTCGCCGTGGATC 245497 | || ||| || | ||| |||| || |||||||| | ||| |||||||| Sbjct 104575 -CTTCTCCGACAGCAGGTTGTAGGTCTCGATGGCTGCGTCGATATCCGTC-CCGTGGATT 104518 Query 245498 TGCAGGGCGCAC-CTCATGAGGGTGTGCTGGGGCGTCTCGATGGGTCCCTCGGGTC--CC 245554 || ||| ||| |||||||| |||| || ||| ||| | || | ||| | Sbjct 104517 CCCACGGC-CACTCTCATGAGCATGTGTTGCGGCCGCTC--AGCCACCTTGCTGTCAATC 104461 Query 245555 TTGAGCATGTAGGAGCGCTCGAGCGTCTTGAACCCAAAG 245593 || |||| |||||||||||| || |||||||| || ||| Sbjct 104460 TTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCGAAG 104422 >seq913 Length=88738 Score = 123 bits (136), Expect = 5e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| || || ||||||| ||||| ||||||||||| ||| |||| ||| ||||||||| Sbjct 60849 TGGTGGCTTTCGCCGCCGTGGAGGGGATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCT 60908 Query 42766 GGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 |||| ||| ||| || |||||| || || |||||||| ||||| ||||||||||| | Sbjct 60909 GGCTGAAGAAGAGGGGCCTGATGCCGGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAG 60968 Query 42826 ACGAGG 42831 |||||| Sbjct 60969 ACGAGG 60974 Score = 123 bits (136), Expect = 5e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| || || ||||||| ||||| ||||||||||| ||| |||| ||| ||||||||| Sbjct 73590 TGGTGGCTTTCGCCGCCGTGGAGGGGATCTTCTTCTCTGGCTCCTTTGCCGCCATCTTCT 73531 Query 42766 GGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGG 42825 |||| ||| ||| || |||||| || || |||||||| ||||| ||||||||||| | Sbjct 73530 GGCTGAAGAAGAGGGGCCTGATGCCGGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAG 73471 Query 42826 ACGAGG 42831 |||||| Sbjct 73470 ACGAGG 73465 Score = 96.9 bits (106), Expect = 7e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| ||||||||||| Sbjct 62377 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTCGAGAAGCG 62436 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 62437 GGTGGGCGAGTACCAG 62452 Score = 96.9 bits (106), Expect = 7e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| ||||||||||| Sbjct 72062 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTCGAGAAGCG 72003 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 72002 GGTGGGCGAGTACCAG 71987 >seq455 Length=2495804 Score = 89.7 bits (98), Expect = 1e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 242935 CCGAGCTGATGAGGTTCCCG--GACAGGACCACTCCGATCGGACAGATGATCAACTCGTA 242992 ||| |||| | |||| || ||||||||||| |||||||| || |||||| | |||| Sbjct 1400573 CCGTGCTGGTTTTGTTCACGCAGACAGGACCACGACGATCGGAAAGCTGATCAGCGCGTA 1400514 Query 242993 CCTGCTCAACAAGAGCGATCTGGACGATCACGTCGTACACCTCCTGTTCTCGGCCAACCG 243052 |||| || ||||| |||||||| || ||| || ||| | |||||||| || ||||| Sbjct 1400513 CCTGGAGAAGAAGAGTGATCTGGAGGACCACACGGTGCACTTGCTGTTCTCTGCAAACCG 1400454 Query 243053 ATGGGA 243058 ||||| Sbjct 1400453 CTGGGA 1400448 >seq1698 Length=2458952 Score = 87.8 bits (96), Expect = 3e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || ||||| | || || ||| | || || |||||||| |||||||| || | || || Sbjct 826352 GGGGAGAGAATTGTGGCTTTTGCAGCTGTGGAGGGCATTTTCTTCTCTGGTTCATTTGCT 826411 Query 42756 TCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTC 42815 | |||| |||| | ||| ||| || ||||| ||||| |||| ||| ||||| ||| Sbjct 826412 GCTATCTACTGGTTAAAGAAGAGGGGCCTAATGCCTGGACTTACCTACTCCAACGAGCTC 826471 Query 42816 ATCAGCAGGGACGAGG 42831 || ||||||||||||| Sbjct 826472 ATTAGCAGGGACGAGG 826487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944260855259120