Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq541 89.7 4e-13 seq399 84.2 2e-11 seq1794 82.4 6e-11 >seq541 Length=2265278 Score = 89.7 bits (98), Expect = 4e-13 Identities = 73/85 (86%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 115587 |||||||| ||||||||||| |||| |||||||||||||| || | |||| ||||||| Sbjct 1117706 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGGATGAGCGATCAAAGGAAC 1117647 Query 115588 CAAAACTGATATATTGAGCCATTCG 115612 || ||||||| || ||||||||||| Sbjct 1117646 CATAACTGATTTAATGAGCCATTCG 1117622 Score = 89.7 bits (98), Expect = 4e-13 Identities = 73/85 (86%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 114390 |||||||| ||||||||||| |||| |||||||||||||| || | |||| ||||||| Sbjct 1117706 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGGATGAGCGATCAAAGGAAC 1117647 Query 114391 CAAAACTGATATATTGAGCCATTCG 114415 || ||||||| || ||||||||||| Sbjct 1117646 CATAACTGATTTAATGAGCCATTCG 1117622 >seq399 Length=104734 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 114390 |||||||| ||||||||||| |||| |||||||||||||| || | |||| ||||||| Sbjct 73324 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGGATGAGCGATCAAAGGAAC 73383 Query 114391 CAAAACTGATATATTGAGCCATTCG 114415 || |||| || || ||||||||||| Sbjct 73384 CATAACTAATTTAATGAGCCATTCG 73408 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 115587 |||||||| ||||||||||| |||| |||||||||||||| || | |||| ||||||| Sbjct 73324 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAACGGATGAGCGATCAAAGGAAC 73383 Query 115588 CAAAACTGATATATTGAGCCATTCG 115612 || |||| || || ||||||||||| Sbjct 73384 CATAACTAATTTAATGAGCCATTCG 73408 >seq1794 Length=89003 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/83 (86%), Gaps = 5/83 (6%) Strand=Plus/Minus Query 115532 ATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA--GATCTAAGGAAC 115587 ||||||| ||||||||||| |||| |||||||||||||| || | | |||| ||||||| Sbjct 64057 ATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAAC-GAATGAGCGATCAAAGGAAC 63999 Query 115588 CAAAACTGATATATTGAGCCATT 115610 || ||||||| || ||||||||| Sbjct 63998 CATAACTGATTTAATGAGCCATT 63976 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/83 (86%), Gaps = 5/83 (6%) Strand=Plus/Minus Query 114335 ATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA--GATCTAAGGAAC 114390 ||||||| ||||||||||| |||| |||||||||||||| || | | |||| ||||||| Sbjct 64057 ATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAAC-GAATGAGCGATCAAAGGAAC 63999 Query 114391 CAAAACTGATATATTGAGCCATT 114413 || ||||||| || ||||||||| Sbjct 63998 CATAACTGATTTAATGAGCCATT 63976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397030282242874