Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1696 187 3e-42 seq913 91.5 2e-13 seq34 86.0 7e-12 >seq1696 Length=952724 Score = 187 bits (206), Expect = 3e-42 Identities = 889/1391 (64%), Gaps = 30/1391 (2%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| |||||||||||| Sbjct 105861 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 105802 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT-TTTCCCTAATGCGT-T 114059 || || ||||| || |||| || |||||||| | | || | ||| | | | | | Sbjct 105801 GCCGTTGGCATTGGAGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAC--CTTCT 105744 Query 114060 CCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGA 114119 |||| || || | |||||| | | | ||| | | || |||||| || |||||| Sbjct 105743 CCTTCAGCGCCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCTTCCACATGTCGTACTGGA 105684 Query 114120 GGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCA 114179 ||| || | | | || || || || | |||||||| ||||| | | | || | Sbjct 105683 AGATGCCCTTACTGACCGGGGAACCTTCGTACGTCTCGTAGGGGCCGTGTTCGGCGGCTA 105624 Query 114180 ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG 114239 | || | |||||||| || || |||| || || |||||||| || | || | Sbjct 105623 ACTCACAACTCGCCTCCAGAGCAGCGTAGTAAATGGTCTCAAAGATTTGGATGTTGAGCA 105564 Query 114240 CCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAAATACATCCGCGAGACCT 114298 || ||||| | ||||| | || ||| || ||||| | || || | ||| Sbjct 105563 GCTGAGCCTCAGGGCTTTCAAATG-GATAACGCATCAGGATAAAGGCGTCAGCCAATCCT 105505 Query 114299 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGA 114358 ||||| || | || ||||| | || | |||||||||| | || ||||| || Sbjct 105504 TGGACTCCAATTCCTATTGGCCTGTGGCGCATATTAGACCTCTTGGCCTCTTCCACTGGG 105445 Query 114359 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 114418 || | || | ||||||| | | |||| ||| || | || || || | ||| Sbjct 105444 TAGTAGTTTATGTCGATAATCTTGTTTAAGTTTCTGACAATTACTTTGGTCACAG-ATGC 105386 Query 114419 -AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 114477 || |||| | ||| || | || ||| |||| ||| | || ||||| || Sbjct 105385 CAGTTTTTTAAAGTCATAAGTCCG---CTCAGGTGTGACGTACATGTTGAGAGCGATGGA 105329 Query 114478 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 114537 |||||||| || |||| ||| ||||| ||||| || | ||||| || || | Sbjct 105328 GGCCAGATTGCAGACAGCCACCTCGTCCTTGCTGGTGTATTCGACGATTTCTGTGCAGAG 105269 Query 114538 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 114597 || | ||| ||||| |||| |||| || || ||| |||| || || || || Sbjct 105268 GTTGCTGCACTTGATGGTCCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCRTCTTT 105209 Query 114598 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT- 114656 ||| |||||||| |||||||| || || || || |||| | || || | ||| | | Sbjct 105208 GTACAGCATGTACGGCGTCCCAGTTTCTGTCTGTGACTCAATGATGGCGTACCACAGCTG 105149 Query 114657 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTT 114716 | | | || || || ||| | | |||||||| |||||| | |||||||| | | Sbjct 105148 CTGAGCCTTCACCACACGC-TTGACCCTCCCCTCCTTCTCGTATCTGGTGTAGAGCTCCT 105090 Query 114717 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACC 114776 ||||||| || ||| | ||| ||||| || | | || || | || |||| Sbjct 105089 CAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACC 105030 Query 114777 ATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGA 114836 | | || | ||| || | ||||||||||||||| |||||||| || || |||| | Sbjct 105029 AGTCTTCATTATTCTCCACCCTCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAAAA 104970 Query 114837 GATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCAT 114894 | |||| || ||| ||||| | ||| || || ||||| ||||| | Sbjct 104969 GGTCCCTC--GCTCGCTGCTCTTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAA 104912 Query 114895 GATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGACCAG 114950 | ||| ||||| || |||||||||| |||| | || ||| | | || Sbjct 104911 CACATCAAAATGCCAGGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCCC- 104853 Query 114951 CCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAG 115010 |||||| || || | || ||| || | || | ||||| || | || |||| | Sbjct 104852 CCTGGTCGACGTAACGTGCAGTGTTGTTGTAGACCCTCAGCATGGGGACGAGCCCATTGG 104793 Query 115011 ATTGGCCATTTGTCCCC-CGAATACGAGACTTATTGGCTCTGA--CATCATGGATGTGCA 115067 | ||| || || || ||| | | | ||| ||||| || | || | Sbjct 104792 AGCAGCCGTTGGTGCCAGCGATGTAGCTCCCTGTTGA-TCTGATGCAGCT--GACCGCTA 104736 Query 115068 TACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCC 115127 || || || || ||| | || ||||| | ||||| | | | || || ||||||| | Sbjct 104735 CRCCGATTCCGCCGGCCGATTTGGAGATGAGGGCGCATTGCTTCAGTGTGTCGTAGATGC 104676 Query 115128 CGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTG 115187 | ||||| ||| |||| |||| | ||||||||||| |||| |||||||| | Sbjct 104675 CCTCGATGCTGTCGTCCTTCATTGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTGG 104616 Query 115188 TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTATCG 115246 | ||||| |||||||||||||| | |||||| ||||| || | | |||| | | | Sbjct 104615 TTCCAGCATTGAAGAGGGTTGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGCAGGTTG 104557 Query 115247 TAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAAC 115306 |||||||| | | | ||| || || |||||| || || | | || | ||| | | Sbjct 104556 TAGGTCTCGATGGCTGCGTCGATATCCGTCCCGTGGATTCCCACGGCCACTCTCATGAGC 104497 Query 115307 ATGTATTGGGG 115317 |||| ||| || Sbjct 104496 ATGTGTTGCGG 104486 >seq913 Length=88738 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||||| ||| || ||||| || |||| ||||| Sbjct 60974 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCCGGCATCAGGCCCCTCTTCT 60915 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| |||||| || || ||| || || ||||||||||| |||||||| ||||| | Sbjct 60914 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATCCCCTCCACGGCGGCGAAAG 60855 Query 126186 CAAAGAGACGCTC 126198 | | | |||||| Sbjct 60854 CCACCACACGCTC 60842 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||||| ||| || ||||| || |||| ||||| Sbjct 73465 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCCGGCATCAGGCCCCTCTTCT 73524 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| |||||| || || ||| || || ||||||||||| |||||||| ||||| | Sbjct 73525 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATCCCCTCCACGGCGGCGAAAG 73584 Query 126186 CAAAGAGACGCTC 126198 | | | |||||| Sbjct 73585 CCACCACACGCTC 73597 >seq34 Length=1455329 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||||| ||||| | |||||||||| |||| ||| ||||| ||||| Sbjct 918644 TAGATGTTGCTGGTGTATGCCTCAATGGACTCATTGTTGCCCAGGATCTGGGCAGTGGAA 918703 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 ||||||||||| || |||| || || || || Sbjct 918704 GCTGTGGGCATTGGGGCCAAAAGGAGACTATT 918735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597304042051960