Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq33 109 6e-19 seq1357 95.1 1e-14 seq1787 93.3 5e-14 seq5784 91.5 2e-13 seq1033 91.5 2e-13 seq143 91.5 2e-13 seq490 87.8 2e-12 seq115 87.8 2e-12 >seq33 Length=2144867 Score = 109 bits (120), Expect = 6e-19 Identities = 158/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 41985 CCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGA 42044 || || | ||||| |||| || | ||| |||||| || || ||||| |||| ||| Sbjct 1190963 CCCCTGAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGG 1190904 Query 42045 GTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACG 42104 || || | || || |||||||| |||||||| || || | ||||||||||| || | | Sbjct 1190903 GTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATG 1190844 Query 42105 CTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCG 42164 | |||||| ||| ||| || ||| | || | | ||||| || | || || || Sbjct 1190843 CCCTCCTTATCCTGGATCTTAGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCC 1190784 Query 42165 ACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||||||| ||||| || || || || || ||||| ||||| Sbjct 1190783 AGGGTGATGGTCTTGCCAGTGAGGGTTTTCACRAAGATCTGCAT 1190740 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| |||| ||| || || | || || |||||||| || || || Sbjct 1190703 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 1190644 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | ||||||||||| || | || || |||||| |||||| || | | Sbjct 1190643 GATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTTACATT 1190584 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||||| | || || || | |||||||| ||||| || || || || || Sbjct 1190583 TTCAATTGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCAC 1190524 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 1190523 AAAGATCTGCAT 1190512 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 41973 ATTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTG 42032 |||||| |||| ||||| | ||||| |||| || | ||| |||||| || || ||| Sbjct 1213868 ATTTATTGACCGCCTCTGAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTG 1213809 Query 42033 TAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGG 42092 || |||| ||| || || | || || |||||||||||||| || || || | ||||||| Sbjct 1213808 TAGTCAGACAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGG 1213749 Query 42093 TCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 || | || | || |||||| ||| ||| || Sbjct 1213748 TCAGGGGGAATGCCCTCCTTATCCTGGATCTT 1213717 >seq1357 Length=1100848 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 4/85 (5%) Strand=Plus/Plus Query 56998 AAAAATTTT----CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 ||||||||| |||| || | | |||||||||| ||||||||||||||||||||| Sbjct 1093135 AAAAATTTTTTTACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 1093194 Query 57054 ATACTCACCACTATACTACCGAGGA 57078 |||||||||||||||||| |||||| Sbjct 1093195 ATACTCACCACTATACTAACGAGGA 1093219 Score = 93.3 bits (102), Expect = 5e-14 Identities = 80/98 (82%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 56983 AAATTAACGTTTATGAAAAATTTTC--TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGC 57040 ||||||| || | ||| ||||| ||| || | | |||||||||| |||||||||| Sbjct 1092312 AAATTAAAGTGAAAAGAAAGTTTTCACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGC 1092371 Query 57041 GTGACAGGCGGACATACTCACCACTATACTACCGAGGA 57078 ||||||||||| |||||||||||||||||| |||||| Sbjct 1092372 GTGACAGGCGGGGATACTCACCACTATACTAACGAGGA 1092409 >seq1787 Length=100265 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || |||| || |||| || | | |||||||||| ||||||||||||||||||||| | Sbjct 16403 ATAAAAAGTTACCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 16462 Query 57055 TACTCACCACTATACTACCGAGGA 57078 ||||||||||||||||| |||||| Sbjct 16463 TACTCACCACTATACTAACGAGGA 16486 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 14346 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 14405 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 14406 TACTAACGAGGAGTG 14420 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 18569 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 18628 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 18629 TACTAACGAGGA 18640 >seq5784 Length=1137 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 1061 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1120 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 1121 TACTAACGAGGACTG 1135 >seq1033 Length=355194 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 92724 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 92783 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 92784 TACTAACGAGGAGTG 92798 >seq143 Length=2590508 Score = 91.5 bits (100), Expect = 2e-13 Identities = 70/82 (85%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 56998 AAAAATTTTC-TCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||||| | ||| || | | |||||||||| ||||||||||||||||||||| ||| Sbjct 923558 AAAAATTTGCCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 923499 Query 57057 CTCACCACTATACTACCGAGGA 57078 || |||||||||||| |||||| Sbjct 923498 CTAACCACTATACTAACGAGGA 923477 >seq490 Length=1568546 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1010803 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 1010862 Query 57066 ATACTACCGAGGA 57078 |||||| |||||| Sbjct 1010863 ATACTAACGAGGA 1010875 >seq115 Length=788868 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 3/82 (4%) Strand=Plus/Plus Query 57000 AAATTTT---CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 ||||||| |||| || | | |||||||||| ||||||||||||||||||||| ||| Sbjct 755288 AAATTTTGGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATA 755347 Query 57057 CTCACCACTATACTACCGAGGA 57078 || |||||||||||| |||||| Sbjct 755348 CTAACCACTATACTAACGAGGA 755369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543167733708080