Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq33 131 2e-25 seq1605 91.5 1e-13 >seq33 Length=2144867 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | |||||| | ||||| |||||||||||| Sbjct 1190708 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 1190649 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||||||||||||||| |||||||| || || ||||| |||| Sbjct 1190648 GCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTT 1190589 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | ||| || | || || || || | || | ||||||||| || | ||| Sbjct 1190588 ACATTTTCAATTGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTT 1190529 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 1190528 TTCACAAAGATCTGCAT 1190512 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | |||||| | ||||| |||||||||||| Sbjct 1190480 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 1190421 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| ||||||||| || ||||| || || || || || ||||| |||| Sbjct 1190420 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTT 1190361 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | ||| || | || || || || | || | ||||||||| || | || Sbjct 1190360 ACATTTTCAATTGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 1190301 Query 64427 TTTACGAAAATTTGCATTTT 64446 || || || || ||||| || Sbjct 1190300 TTGACAAAGATCTGCATCTT 1190281 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | ||||| | ||||| ||||||||||| Sbjct 1213449 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCATCTTCCAGCTGCTTGCCA 1213390 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || |||| ||||||||| || ||||| |||||||| || || ||||| ||| Sbjct 1213389 GCGAAGATCAGCCTCTGCTGGTCAGGGGGAATCCCTTCTTTGTCCTGGATTTTGGCCTTC 1213330 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || | || || || || | || | ||||||||| || | || Sbjct 1213329 ACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTC 1213270 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || ||||| || Sbjct 1213269 TTGACGAAGATCTGCATCTT 1213250 Score = 100 bits (110), Expect = 3e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | |||||| | ||||| ||||||||||| Sbjct 1190936 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCA 1190877 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || |||| |||||||||||| ||||| || || || || || | | || ||||| Sbjct 1190876 GCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGA-TCTTAGCTTT 1190818 Query 64367 -ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGT 64425 || ||| | || |||| || || || || | || | ||||||||| || | || Sbjct 1190817 CACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGT 1190758 Query 64426 TTTTACGAAAATTTGCAT 64443 ||| || || || ||||| Sbjct 1190757 TTTCACRAAGATCTGCAT 1190740 >seq1605 Length=404251 Score = 91.5 bits (100), Expect = 1e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 ||||| ||| | ||||||| ||||||||| ||||| || ||||| || || || || || Sbjct 108729 TTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTA 108788 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 ||| ||| ||| | || |||| || ||||| || | || | ||||||||||||| Sbjct 108789 GCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 108848 Query 64421 AAAGTTTTTACGAAAATTTGCATTTTAA 64448 | || || || || || ||||| |||| Sbjct 108849 AGGGTCTTGACAAAGATCTGCATCTTAA 108876 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499603348218280