Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq1696 181 1e-40 >seq1696 Length=952724 Score = 181 bits (200), Expect = 1e-40 Identities = 597/925 (65%), Gaps = 8/925 (1%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||| | |||||| ||||||||| || ||||| || ||||| || ||| | Sbjct 104414 TACAACTTCTTCGGCTTCAAGACTCTGGAGCGCTCCTACCTGCTGAAGATTGACAGCAAG 104473 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || | ||||| ||||| || |||| ||| | || ||| | || || ||||| || Sbjct 104474 GTGGCTGAGCGGCCGCAACACATGCTCATGAGAGTGGCCGTGGGAATCCACGGGACGGAT 104533 Query 93838 AT-GCCGAATGTTTTGCGGGCTTTCAGAGACATGCGG---GACAAGAGGTATACCATGGC 93893 || | || | | | | || || || ||| | || ||| ||| ||| || Sbjct 104534 ATCGACGCAGCCATCGAGACCTA-CA---ACCTGCTGTCGGAGAAGTGGTTCACCCACGC 104589 Query 93894 CACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT 93953 | | || ||||| ||||| || || ||| ||||||| ||||| || |||||| | Sbjct 104590 CTCTCCAACCCTCTTCAATGCTGGAACCAACAGGCCACAGCTGTCTAGCTGCTTCCTGCT 104649 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 | | |||| |||| |||| || || | ||||| || ||| | || || ||| Sbjct 104650 TGCAATGAAGGACGACAGCATCGAGGGCATCTACGACACACTGAAGCAATGCGCCCTCAT 104709 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTA 94073 ||| |||| || || |||||||| | ||| | | | | | | || ||| Sbjct 104710 CTCCAAATCGGCCGGCGGAATCGGYGTAGCGGTCAGCTGCATCAGATCAACAGGGAGCTA 104769 Query 94074 CATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAA 94133 |||| || ||||| ||| |||||| || |||||||| ||||| |||||| |||||| Sbjct 104770 CATCGCTGGCACCAACGGCTGCTCCAATGGGCTCGTCCCCATGCTGAGGGTCTACAACAA 104829 Query 94134 CGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCT 94193 | | || || ||||| |||||||| || | || || | ||||| | || || Sbjct 104830 CACTGCACGTTACGTCGACCAGGGGGGCAACAAAAGACCCGGAGCCTTCGCCATGTACCT 104889 Query 94194 CGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGA 94253 ||||||||||| || ||| | ||| | || ||| |||||| || || || Sbjct 104890 GGAGCCCTGGCATTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGA 104949 Query 94254 TCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAACG 94313 | || | || || ||||| |||||||| || ||| | || ||||| || ||||| | Sbjct 104950 AGAGCAGCGAGCGAGGGACCTTTTCTACGCCCTGTGGATCCCTGACCTCTTCATGAAGAG 105009 Query 94314 CGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCGA 94373 || ||||| || | |||| || | ||||| || || ||||| ||| ||| Sbjct 105010 GGTGGAGAATAATGAAGACTGGTCCCTGATGTGTCCGGCCGACTGCCCCGGGCTGGACGA 105069 Query 94374 CGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAG 94433 || || | ||||| || | || | | ||||| | |||| | || || Sbjct 105070 GTGCTGGGGGGAGGAGTTTGAGGAGCTCTACACCAGATACGAGAAGGAGGGGAGGGTCAA 105129 Query 94434 GAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGACGGG 94493 | || || | ||| | |||||||| | ||| | || |||| || || || Sbjct 105130 GCGTGTGGTGAAGGCTCAGCAGCTGTGGTACGCCATCATTGAGTCACAGACAGAAACTGG 105189 Query 94494 TACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 ||||| ||||| ||| ||| || | |||| ||| |||||||||| | || || Sbjct 105190 GACGCCGTACATGCTGTACAAAGAYGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGG 105249 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 | |||||| || || || ||||| || || ||||| || || ||||||| | Sbjct 105250 GACCATCAAGTGCAGCAACCTCTGCACAGAAATCGTCGAATACACCAGCAAGGACGAGGT 105309 Query 94614 TGCTGTGTGTAACCTGGGCTCCATC 94638 ||||| || || |||| ||||||| Sbjct 105310 GGCTGTCTGCAATCTGGCCTCCATC 105334 Score = 113 bits (124), Expect = 4e-20 Identities = 199/290 (69%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 94994 AGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAG 95053 ||||||| || |||| |||| | ||| || ||| ||| |||| |||||| | | Sbjct 105675 AGGGCATCTTCCAGTACGACATGTGGAAGAAGACGCCAACGGACCTGTGGGACTGGAAGG 105734 Query 95054 CTCTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGC 95113 | || | | || ||||||||| |||| ||| ||||| |||| || |||| Sbjct 105735 CGCTGAAGGAGAAGGTCGCCAAACACGGCGTGAGGAACAGCCTGCTGCTGGCTCCAATGC 105794 Query 95114 CCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCA 95173 | ||||||||||| || |||||||| |||||||||||||| |||| ||| |||| || Sbjct 105795 CAACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACACCAGCA 105854 Query 95174 ACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTAC 95233 || | |||| | | ||||||| | || || || | || ||||| ||||| || Sbjct 105855 ACATCTACACCCGCAGGGTGCTGTCAGGAGAGTTTCAGATCGTCAACCCTCACCTGCTCA 105914 Query 95234 GGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTG 95283 ||||||||| ||| ||||| | || | | |||||||| ||| Sbjct 105915 AAGACCTGACGGAGAGGGGACTGTGGAGCGAGGACATGAAGAACCAGCTG 105964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494682156526520