Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1696 176 4e-39 seq33 102 8e-17 >seq1696 Length=952724 Score = 176 bits (194), Expect = 4e-39 Identities = 940/1484 (63%), Gaps = 38/1484 (3%) Strand=Plus/Minus Query 153009 AGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTCAAA 153068 ||||| | || || || ||||||| | |||||||| || | || ||| | | Sbjct 105921 AGGTCTTTGAGCAGGTGAGGGTTGACGATCTGAAACTCTCCTGACAGCACCCTGCGGGTG 105862 Query 153069 TATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTGGTT 153128 || | ||||| ||| | | || | ||| ||||| ||||| || || || || |||| Sbjct 105861 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 105802 Query 153129 GCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGCGCT-CGAATGTCGTC 153187 || || ||||| |||| || || |||| || |||||| ||| || || Sbjct 105801 GCCGTTGGCATTGGAGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGACCTTC-TC 105743 Query 153188 CTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTTCCACATGTCGTACTGTAA 153247 ||||| ||||| ||| |||||||| ||| || ||| ||||||||||||||||| || Sbjct 105742 CTTCAGCGCCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCTTCCACATGTCGTACTGGAA 105683 Query 153248 CACTCCTCGACTGGCGGGACTGCCGGCAAACGTACTGTAGCTGCCGTCGCGTTGGGCCAG 153307 | || |||| | || || | |||| |||| ||||| ||| ||| Sbjct 105682 GATGCCCTTACTGACCGGGGAACCTTCGTACGTCTCGTAGGGGCCGT---GTTCGGCGGC 105626 Query 153308 T---TCGCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATTTGTTTATTGAG 153364 | || || || ||||| || || | ||||| ||||| || |||||| | ||||| Sbjct 105625 TAACTCACAACTCGCCTCCAGAGCAGCGTAGTAAATGGTCTCAAAGATTTGGATGTTGAG 105566 Query 153365 AACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACC 153424 | || || ||| || | || |||| ||| | ||||||||| |||| || Sbjct 105565 CAGCTGAGCCTCAGGGCTTTCAAATGGATAACGCATCAGGATAAAGGCGTCAGCCAATCC 105506 Query 153425 CTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCGCG-CTCGCTATGG 153483 |||| || | || || || | || | || | | | || || | ||| Sbjct 105505 TTGGACTCCAATTCCTATTGGCCTGTGGCGCATATTAGACCTCTTGGCCTCTTCCACTGG 105446 Query 153484 GATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCT 153543 | |||| || |||||||| ||||| | ||| | || | ||||| || | | Sbjct 105445 G-TAGTAGTTTATGTCGATAATCTTGTTTAAGTTTCTGACAATTACTTTGGTCACAGATG 105387 Query 153544 TAAGTTTCTCGAAATCATAGGTCATTTCGTCGACGCGT-ACGCATCGATTCACGGCAATA 153602 ||||| | || ||||| ||| || | | || ||| | || | || || Sbjct 105386 CCAGTTTTTTAAAGTCATAAGTCCGCTC----AGGTGTGACGTACATGTTGAGAGCGATG 105331 Query 153603 GACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAG 153662 || |||||||| ||||| ||| ||| || | | |||| | ||||| || | |||| Sbjct 105330 GAGGCCAGATTGCAGACAGCCACCTCGTCCTTGCTGGTGTATTCGACGATTTCTGTGCAG 105271 Query 153663 AGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCT 153722 ||||||||||| || ||| |||| ||| ||||| ||||| || | ||||| || ||| Sbjct 105270 AGGTTGCTGCACTTGATGGTCCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCRTCT 105211 Query 153723 TTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTA-TGCAG 153781 ||| | ||||||||||| || || || || | || | ||| | || ||| Sbjct 105210 TTGTACAGCATGTACGGCGTCCCAGTTTCTGTCTGTGACTCAATGAT-GGCGTACCACAG 105152 Query 153782 GTCCTGCGC--TC-GCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTCGTACAG 153838 | ||| || || ||| |||| || | ||||| ||||||||| ||| || Sbjct 105151 CTGCTGAGCCTTCACCACACGCT--TGA-CCCTCCCCTCCTTCTCGTATCTGGTGTAGAG 105095 Query 153839 TCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAG 153898 ||||||||| || || |||| ||| | || ||||| || | |||||||||||| Sbjct 105094 CTCCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCAGTCGGCCGGACACATCAG 105035 Query 153899 CGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTA 153958 ||||| || | | || | |||||| || || || | ||| || ||||| Sbjct 105034 GGACCAGTCTTCATTATTCTCCACCCTCTTCATGAAGAGGTCAGGGATCCACAGGGCGTA 104975 Query 153959 CATGAGGTCGCGCGCCTTGC-AATCCTCCGCGCCCATGTTGCGTTTCAGATTGAGCACGC 154017 | ||||| | || || || || ||| ||| |||| ||||| | || | | Sbjct 104974 GAAAAGGTCCCTCG-CTCGCTGCTCTTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGT 104916 Query 154018 TATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC---TTTACGCTTTC 154074 | | | || |||||||| || | ||| | ||| | ||| || | | || | Sbjct 104915 CAAACACATCAAAATGCCAGGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGC 104856 Query 154075 CGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGC 154134 | ||||| ||||||| || | | |||||| |||| | || |||||| | || || Sbjct 104855 CCCCCTGGTCGACGTAACGTGCAGTGTTGTTGTAGACCCTCAGCATGGGGACGAGCCCAT 104796 Query 154135 TTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTA- 154193 | | | ||||||||| | ||| | ||| || | | ||||||| | | Sbjct 104795 TGGAGCAGCCGTTGGTGCCAGCGATGTAGCTCCC-----TGTTGATCTGATGCAGCTGAC 104741 Query 154194 ----ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTA 154249 || || || |||||| | | || || ||| ||||| | ||| || ||| Sbjct 104740 CGCTACRCCGATTCCGCCGGCCGATTTGGAGATGAGGGCGCATTGCTTCAGTGTGTCGTA 104681 Query 154250 GATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAAT 154309 |||||| |||||||| ||||| | | |||| ||| || | ||| || || | Sbjct 104680 GATGCCCTCGATGCTGTCGTCCTTCATTGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCT 104621 Query 154310 GCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCAT 154369 | ||||| || |||||||| ||| ||||| || ||| || | || || Sbjct 104620 GTTGGTTCCAGCATTGAAGAGGGTTGGAGAGGCGTGGGTGAACCACTTCTCCGACAGCAG 104561 Query 154370 GCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCAT 154429 | ||| || |||||||| | |||||||| ||||| || || | || || | ||| Sbjct 104560 GTTGTAGGTCTCGATGGCTGCGTCGATATCCGTCCCGTGGATTCCCACGGCCACTCTCAT 104501 Query 154430 GAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCA 154473 ||||||||| ||||| || || || || | |||||||||||| Sbjct 104500 GAGCATGTGTTGCGGCCGCTCAGCCACCTTGCTGTCAATCTTCA 104457 >seq33 Length=2144867 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || || || || || || || |||| | Sbjct 1190705 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 1190646 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| ||||| || ||||||||||| |||||| |||| Sbjct 1190645 AAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTTACA 1190586 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | |||||| | | ||| ||||| | || | || || ||||| || ||||| Sbjct 1190585 TTTTCAATTGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTC 1190526 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 1190525 ACAAAGATCTGCAT 1190512 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || || || || || || || |||| | Sbjct 1190477 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 1190418 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || || || ||||| |||||| |||| Sbjct 1190417 AAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTTACA 1190358 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | |||||| | | ||| ||||| | || | || || ||||| || || || Sbjct 1190357 TTTTCAATTGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTG 1190298 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 1190297 ACAAAGATCTGCAT 1190284 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || | || ||| | ||| | || | | | |||||||| || ||||||||||| Sbjct 1213480 GCCACCCCTCAGACGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1213421 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || || || || || || || | |||| || | ||| ||||| || || Sbjct 1213420 CAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGG 1213361 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||||||||| |||||| || | | || | ||||||| | | ||| || Sbjct 1213360 AATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAAC 1213301 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||| || || || || || |||||||| Sbjct 1213300 CTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 1213253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496221228830640