Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1696 118 1e-21 seq33 95.1 1e-14 >seq1696 Length=952724 Score = 118 bits (130), Expect = 1e-21 Identities = 479/738 (65%), Gaps = 28/738 (4%) Strand=Plus/Minus Query 146063 GGTTGACCACCTGAAACTCGCCGGCGAGAACGCGCCTCAGATACACGTTGCTGGTGAACG 146122 ||||||| | ||||||||| || | || || | | || | |||||||||| | | Sbjct 105902 GGTTGACGATCTGAAACTCTCCTGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGG 105843 Query 146123 GCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGTAGGCATGTACGCCA 146182 ||||| ||||||||||| || || ||||| || || | || || ||||| |||| Sbjct 105842 CCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTTGGCATTGGAGCCA 105783 Query 146183 CCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCCCGTAGTTTGGACCAATTCC 146242 ||||| ||| |||||||||||| | | ||| ||| || ||| | || Sbjct 105782 GCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGACCTTCTCCTTCAGCGCCTTCCAGTCCC 105723 Query 146243 ACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCATAGTGCCG---CGGAACA 146299 ||| | ||||| || | || | ||||||| || | |||| | || | Sbjct 105722 ACA---GGTCCGTTGGCGTCTTCTTCCACATGTCGTACTGGAAGATGCCCTTACTGACCG 105666 Query 146300 GGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTT-GGCCAGTTCGCAGCTAGCT 146358 ||| | | |||||| || || || |||| | || ||| | || || || || Sbjct 105665 GGGAACCTT---CGTACGTCTCGTAGGGGCCGT-GTTCGGCGGCTAACTCACAACTCGCC 105610 Query 146359 TCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTTGACGCTCCTG-GCCTCCTC 146417 |||||||| | |||| |||||||| ||| | ||||| || ||| ||||| Sbjct 105609 TCCAGAGCAGCGTAGTAAATGGTCTCAAAGATTTGGATGTTGA-GCAGCTGAGCCTCAGG 105551 Query 146418 GCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCGAGACCCTGTATCCCGACAC 146476 ||| || | || ||| || | || | ||||||||| || | || || | || | | Sbjct 105550 GCTTTCAAATGG-ATAACGCATCAGGATAAAGGCGTCAGCCAATCCTTGGACTCCAATTC 105492 Query 146477 CAACGGGGCGGTGTTTCTTGTTA---CTGTTCGCAGCGCCCGCAGTGGGATAGTGGTTGC 146533 | | || | ||| | | ||| || || || | || | |||| |||| ||| Sbjct 105491 CTATTGGCCTGTGGCGCATATTAGACCTCTTGGCCTCTTCCAC--TGGG-TAGTAGTTTA 105435 Query 146534 TGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAACGATTC-AGCAGGACA 146592 ||||||| |||||||| | || | || | | ||| |||| | ||| | || | Sbjct 105434 TGTCGATAATCTTGTTTAAGTTTCTGACAATTACTTTGGTCACA-GATGCCAGTTTTTTA 105376 Query 146593 TAGTCAAATGTTTTAGTTTTAACGT-TGACGCACTTGTTGACGGCGATAGAGGCCAAGTT 146651 ||||| | || | | || ||||| || |||||| ||||| ||||||| || Sbjct 105375 AAGTCATAAGTCCGC----TCAGGTGTGACGTACATGTTGAGAGCGATGGAGGCCAGATT 105320 Query 146652 ACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCA 146711 || || || |||||||||| | || | || || || | ||||||||||||||| Sbjct 105319 GCAGACAGCCACCTCGTCCTTGCTGGTGTATTCGACGATTTCTGTGCAGAGGTTGCTGCA 105260 Query 146712 CTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCAT 146771 ||||||| | |||| ||| | ||||| || | ||||||||| || ||||| ||||| Sbjct 105259 CTTGATGGTCCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCRTCTTTGTACAGCAT 105200 Query 146772 GTACGGTCCCCCGGTTTC 146789 |||||| ||| ||||| Sbjct 105199 GTACGGCGTCCCAGTTTC 105182 >seq33 Length=2144867 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || || ||||| | Sbjct 1190954 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 1190895 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || |||||| |||||| | |||||| ||||| || ||||||||||| Sbjct 1190894 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTA 1190835 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || || | | || | |||||| | ||| || || | ||| | Sbjct 1190834 TCCTGGATCTTAGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 1190775 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| || || ||||| || || ||||||||| Sbjct 1190774 GTCTTGCCAGTGAGGGTTTTCACRAAGATCTGCATG 1190739 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| || || ||||| | Sbjct 1190498 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA 1190439 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||||| | |||||| || || || |||||||||||| Sbjct 1190438 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTG 1190379 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| |||||| ||| | | ||| | ||||| | ||| || || | ||| | Sbjct 1190378 TCCTGGATTTTGGCCTTTACATTTTCAATTGTGTCGCTGGGCTCAACCTCCAGGGTGATG 1190319 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| || || || || ||||| |||||||| Sbjct 1190318 GTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 1190284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475461351264880