Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1696 143 2e-29 >seq1696 Length=952724 Score = 143 bits (158), Expect = 2e-29 Identities = 880/1402 (63%), Gaps = 40/1402 (3%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGG-ACG 122956 ||||| || || || ||||| ||||||||| | || || | || | ||||| ||| Sbjct 104471 AAGGTGGCTGAGCGGCCGCAACACATGCTCATGAGAGTGGCCGTGGGAATCCACGGGACG 104530 Query 122957 CGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGC 123016 || ||||| || | ||| || ||| | || |||| | || | ||||| ||||| Sbjct 104531 -GATATCGACGCAGCCATCGAGACCTACAACCTGCTGTCGGAGAAGTGGTTCACCCACGC 104589 Query 123017 GAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCT 123076 ||| || | ||| || || || || ||| ||| ||||| || || |||| Sbjct 104590 CTCTCCAACCCTCTTCAATGCTGGAACCAACAGGCCACAGCTGTCTAGCTGCTTCCTGCT 104649 Query 123077 CACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGAT 123136 | || || ||||||||| || ||||| || || || | ||||| | || Sbjct 104650 TGCAATGAAGGACGACAGCATCGAGGGCATCTACGACACACTGAAGCAATGCGCCCTCAT 104709 Query 123137 TTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCA-CGACGTAAGAGGCCGCGGAAGCC 123195 ||||||| | |||||| || || || | || || | | | ||| || ||| Sbjct 104710 CTCCAAATCGGCCGGCGGAATCGGYGT-AGCGGTCAGCTGCATCAGATCAACAGGGAGCT 104768 Query 123196 GCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATA 123255 |||| ||||| |||| | || ||||||| |||||||| | || ||||| | Sbjct 104769 ACATCGCTGGCACCAACGGCTGCTCCAATGGGCTCGTCCCCATGCTGAGGGTCTACAACA 104828 Query 123256 ACGCCGTGCGGCACGTCGACCAGGGCGGCAAACGCAAA------GGCGCGATGGCGATCT 123309 || | | || ||||||||||||| ||||| |||| || || | || || | Sbjct 104829 ACACTGCACGTTACGTCGACCAGGGGGGCAA---CAAAAGACCCGGAGCCTTCGCCATGT 104885 Query 123310 ATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGG 123369 | || || || ||||| ||||||||| || || | | | || |||| ||| Sbjct 104886 ACCTGGAGCCCTGGCATTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAA 104945 Query 123370 CGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGC 123429 |||||| || ||| | || | || ||||| | ||| | || || | || ||| Sbjct 104946 AGGAAGAGCAGCGAGCGAGGGACCTTTTCTACGCCCTGTGGATCCCTGACCTCTTCATGA 105005 Query 123430 GACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGA 123489 | || | | | | | ||||| || |||||||| | || ||||| || Sbjct 105006 AGAGGGTGGAGAATAATGAAGACTGGTCCCTGATGTGTCCGGCCGACTGCCCCGGGCTGG 105065 Query 123490 GCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAAC 123549 ||| | || | ||||||| ||| | ||| | ||||||| || || | Sbjct 105066 ACGAGTGCTGGGGGGAGGAGTTTGAGGAGCTCTACACCAGATACGAGAAGGAGGGGAG-- 105123 Query 123550 AGGTTA---GTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCG 123606 ||| | || ||| ||| | | ||| | || || || |||| | Sbjct 105124 -GGTCAAGCGTGTGGTGAAGGCTCAGCAGCTGTGGTACGCCATCATTGAGTCACAGACAG 105182 Query 123607 AAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCA 123666 |||| || |||||||||||||| |||||||| |||||||||||||| | ||| ||| | Sbjct 105183 AAACTGGGACGCCGTACATGCTGTACAAAGAYGCCTGCAACAGGAAGAGCAACCAGCAGA 105242 Query 123667 ACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACA---GCGATG 123723 | |||| || || || || || || || ||| | ||||| ||||||||| || | | Sbjct 105243 ATCTGGGGACCATCAAGTGCAGCAACCTCTGCACAGAAATCGTCGAATACACCAGCAAGG 105302 Query 123724 CCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAAAACG 123783 ||| ||||| || || ||| |||| || || | || | |||| | | Sbjct 105303 ACGAG---GTGGCTGTCTGCAATCTGGCCTCCATCGCTCTCAACATGTACGTCACACCTG 105359 Query 123784 -GCG--CTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGA 123840 ||| ||| | | || ||| || | | || ||| | || | || || | Sbjct 105360 AGCGGACTTATGACTTTAAAAAACTGGCATCTGTGACCAAAGTAATTGTCAGAAACTTAA 105419 Query 123841 ACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAAC 123900 |||| |||||||| | || | || || |||| || || ||||||| || | Sbjct 105420 ACAAGATTATCGACATAAACTACTACCCAGTGGAAGAGGCCAAGAGGTCTAATATGCGCC 105479 Query 123901 ACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGC 123960 |||| || | ||| | || | ||||| ||||| ||||| ||| | || |||| | Sbjct 105480 ACAGGCCAATAGGAATTGGAGTCCAAGGATTGGCTGACGCCTTTATCCTGATGCGTTATC 105539 Query 123961 CGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACG 124020 | | |||||| || || || |||| || | ||||| || || ||||| |||| Sbjct 105540 CATTTGAAAGCCCTGAGGCTCAGCTGCTCAACATCCAAATCTTTGAGACCATTTACTACG 105599 Query 124021 GCGCTTTGGAGGCGAGCTGCGAACTTGC----GAAAATTCACGGCGCGTACGAAAGTTAC 124076 ||| |||||||||| || || | || ||| |||||| | ||||| | ||| Sbjct 105600 CTGCTCTGGAGGCGAGTTGTGAGTTAGCCGCCGAA----CACGGCCCCTACGAGACGTAC 105655 Query 124077 GCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACA 124136 | || ||||| || || || || ||||||||||||||||| || || || Sbjct 105656 GAAGGTTCCCCGGTCAGTAAGGGCATCTTCCAGTACGACATGTGGAAGAAGACGCCAACG 105715 Query 124137 AATTTGTGGGACTGGA--GCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACT 124194 | |||||||||||| ||| | | | || | | | | ||||| || | ||| Sbjct 105716 GACCTGTGGGACTGGAAGGCGCTGAAGGAGAAGG--TCGCCAAACACGGCGTGAGGAACA 105773 Query 124195 CGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAAT 124254 ||| || |||| ||||| ||||| |||| || || || | || |||||||| | Sbjct 105774 GCCTGCTGCTGGCTCCAATGCCAACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGT 105833 Query 124255 CCTTCGAGCCGTTCACTAACAA 124276 || ||||| | | ||| | ||| Sbjct 105834 CCATCGAGGCCTACACCAGCAA 105855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451965700684520