Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq314 109 8e-19 seq268 109 8e-19 seq9 98.7 1e-15 >seq314 Length=1288623 Score = 109 bits (120), Expect = 8e-19 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || | |||||| || || || || || ||||||||||| ||||||||| || Sbjct 648502 GCGGTGTTAATGATGTCAAAGCCAACTGTGCCTCCAAAGGTGCTGGGCTTCCAGTACTCC 648561 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| || |||| | || || | ||| || |||||||||| ||| | Sbjct 648562 GGGGAGCAGATGGGATTTCCCATTAAGCCCTTAAGGGAGAAAGGAGCCCCCATCTCCACC 648621 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 || | || || || || || || | ||||| || || | | ||| | |||||| Sbjct 648622 ATTGTTTCCCCAAAAATACCATTAGGTCTGGGTTTCTCCACTAGCAGGCCTGGGTAGAGC 648681 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || ||||| || || || ||||| | | |||| | ||||| || || ||||| ||| Sbjct 648682 TCCACAGCATCAACATCCCCATACATTTCCTCCAGCAGTGCAGCCATTTCTTTCTCTCCT 648741 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/140 (77%), Gaps = 4/140 (3%) Strand=Plus/Plus Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 |||||||| ||||| |||||| |||| ||||| |||||||| | ||| || |||||||| Sbjct 649733 ATCAGGCATCAGAGGGTGCCAGTGGTACAGGGTGTTGAACTCAGACGCAATACGGTTCTG 649792 Query 9612 GTACTGAAAG-GC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 |||||| ||| || ||| || || | ||| |||||||| | || | ||||| ||| Sbjct 649793 GTACTGGAAGCGCTGGT--TAAAGAGCAGCTCAGGGTCAAACTTGAGTTTGAAGTTATAC 649850 Query 9670 CCGCTGAGTTGCTGGACATA 9689 || || || ||||| ||||| Sbjct 649851 CCACTCAGGTGCTGCACATA 649870 >seq268 Length=824967 Score = 109 bits (120), Expect = 8e-19 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || |||| ||||| ||||| || || || | || || ||||||||||| |||||||| Sbjct 89411 GTGGCGGAGTTCACTATGTCGAAGCCCACTTTGCCTCCAAAGGTGCTGGGCTTCCAGTAT 89470 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || || || ||| ||| ||| ||||| | ||| || || || |||| ||| Sbjct 89471 TCTGGAGAACATATAGGGTTTCCCAGGAGGCCTTTTAGGGAGAAGGGGGCACCCATCTCC 89530 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAG 9112 | ||||| || || || || || || || || | ||| || | || ||||||| ||| Sbjct 89531 ACCATGCTTTCTCCAAATATAGCCCCTGGTCGTGTTTTCTCCAACATCAAGCCAGGGTAA 89590 Query 9113 AGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCT 9167 | || | ||| || | ||| || ||||| |||| | ||| |||||||||| Sbjct 89591 AACTCCAGAGCATCAATGTCACCGTAGAGCTCTTCAAGCTCTCGTGCTATCTCCT 89645 >seq9 Length=473932 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 8963 TCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACGTTCGCCATGAGC 9022 || || |||||||||||||| ||||||||| | || ||||||||| ||| | | || Sbjct 223664 TCGCCTCCGAAGGTGCTGGGCTTCCAGTACTCAGGTGAGCAGATGGGGTTTCCGAGCAGG 223723 Query 9023 CCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAGATGGCACCGGGA 9082 ||||||| || || ||||| |||| ||| | ||||||||||| || || ||| | | | Sbjct 223724 CCTTTCAGAGAGAAGGGAGCACCCATCTCCACCATGCTCTCACCAAAAATTGCATCAGCA 223783 Query 9083 CGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACGTCGCCATAGAGG 9142 || | ||| || | || ||| | ||| | || | || || | ||| || ||||| Sbjct 223784 CGAGCTTTCTCCAGCATTGTGCCTGGGTAAAACTCCAGCGCATCTATGTCACCGTAGAGC 223843 Query 9143 GCTTCCAA--CTCGGCAGCTATCTC 9165 |||| || ||||| ||||| || Sbjct 223844 TCTTCTAAACCTCGG--GCTATTTC 223866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723667957715800