Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1696 185 1e-41 seq913 105 8e-18 seq34 89.7 6e-13 seq1698 82.4 9e-11 >seq1696 Length=952724 Score = 185 bits (204), Expect = 1e-41 Identities = 832/1301 (64%), Gaps = 34/1301 (3%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 105861 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 105802 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATG-----C 116017 || || ||||| || |||| || |||||||| | ||| || || | Sbjct 105801 GCCGTTGGCATTGGAGCCAGCAGCAGGCTGTTCCT------CACGCCGTGTTTGGCGACC 105748 Query 116018 GT-TCCTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAAC 116076 | ||||| || || | |||||| | | | ||| | | || |||||| || || Sbjct 105747 TTCTCCTTCAGCGCCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCTTCCACATGTCGTAC 105688 Query 116077 TGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCC 116136 |||| ||| || | | || || || || | ||||| || ||||| | | | Sbjct 105687 TGGAAGATGCCCTTACTGACCGGGGAACCTTCGTACGTCTCGTAGGGGCCGTGTTCGGCG 105628 Query 116137 GCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTC 116196 || || || | |||||||| || || |||| || || |||||||| || | || Sbjct 105627 GCTAACTCACAACTCGCCTCCAGAGCAGCGTAGTAAATGGTCTCAAAGATTTGGATGTTG 105568 Query 116197 ATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCA-CAAAATAAATACATCCGCGAG 116255 | || ||||| | ||||| | || | ||| || ||||| | || || | Sbjct 105567 AGCAGCTGAGCCTCAGGGCTTTCAAATG-GATAACGCATCAGGATAAAGGCGTCAGCCAA 105509 Query 116256 ACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCAC 116315 |||||||| || | || ||||| | || | |||||||||| | || ||||| Sbjct 105508 TCCTTGGACTCCAATTCCTATTGGCCTGTGGCGCATATTAGACCTCTTGGCCTCTTCCAC 105449 Query 116316 GGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTC 116375 || || | || | ||||||| | | |||| ||| || | || || || | Sbjct 105448 TGGGTAGTAGTTTATGTCGATAATCTTGTTTAAGTTTCTGACAATTACTTTGGTCACAG- 105390 Query 116376 ATGA-AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGA 116434 ||| || |||| | ||| || | || ||| |||| ||| | || |||| Sbjct 105389 ATGCCAGTTTTTTAAAGTCATAAGTCCG---CTCAGGTGTGACGTACATGTTGAGAGCGA 105333 Query 116435 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTAC 116494 | || |||||||| || |||| ||| ||||| ||||| || | ||||| || | Sbjct 105332 TGGAGGCCAGATTGCAGACAGCCACCTCGTCCTTGCTGGTGTATTCGACGATTTCTGTGC 105273 Query 116495 ACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 116554 | | || | ||| ||||| |||| |||| || || ||| |||| || || | Sbjct 105272 AGAGGTTGCTGCACTTGATGGTCCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCRT 105213 Query 116555 CCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA 116614 | ||||| ||||| || |||||||| || || || || |||| | || || | ||| | Sbjct 105212 CTTTGTACAGCATGTACGGCGTCCCAGTTTCTGTCTGTGACTCAATGATGGCGTACCACA 105153 Query 116615 CAT-CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGG 116673 | | | | || || || ||| | | |||||||| |||||| | |||||||| Sbjct 105152 GCTGCTGAGCCTTCACCACACGC-TTGACCCTCCCCTCCTTCTCGTATCTGGTGTAGAGC 105094 Query 116674 GCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAG 116732 |||||||||| || ||| |||| ||| ||||| || | | ||||| | || Sbjct 105093 TCCTCAAACTCCTCCCCC-CAGCACTCGTCCAGCCCGGGGCAGTCGGCCGGACACATCAG 105035 Query 116733 AGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 116792 ||||| | || | ||| |||| ||||||||||||||| |||||||| || || | Sbjct 105034 GGACCAGTCTTCATTATTCTCCACCCTCTTCATGAAGAGGTCAGGGATCCACAGGGCGTA 104975 Query 116793 GAAGAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAG 116850 ||| || |||| || ||| ||||| | ||| || || ||||| ||| Sbjct 104974 GAAAAGGTCCCTC--GCTCGCTGCTCTTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAG 104917 Query 116851 TCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTGCGACG 116906 || | | ||| ||||| || |||||||||| |||| | || ||| | | Sbjct 104916 TCAAACACATCAAAATGCCAGGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTG 104857 Query 116907 ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACC 116966 || |||||| || || | || || ||| | || | ||||| || | || || Sbjct 104856 CCCC-CCTGGTCGACGTAACGTGCAGTGTTGTTGTAGACCCTCAGCATGGGGACGAGCCC 104798 Query 116967 ATCAGATTGGCCATTTGTCCCC-CGAATACGAGACTTGTTGGCTCTGACATCGTGGATGT 117025 || || ||| || || || ||| | | ||||| ||||| | || Sbjct 104797 ATTGGAGCAGCCGTTGGTGCCAGCGATGTAGCTCCCTGTTGA-TCTGATGCAGCTGACCG 104739 Query 117026 GCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGA 117085 | || || || || ||| | || ||||| | ||||| | | | || || |||||| Sbjct 104738 CTACRCCGATTCCGCCGGCCGATTTGGAGATGAGGGCGCATTGCTTCAGTGTGTCGTAGA 104679 Query 117086 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTG 117145 | || ||||| ||| |||| |||| | ||||||||||| |||| |||||||| Sbjct 104678 TGCCCTCGATGCTGTCGTCCTTCATTGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGT 104619 Query 117146 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 || ||||| |||||||||||||| | |||||| ||||| Sbjct 104618 TGGTTCCAGCATTGAAGAGGGTTGGAGAGGCGTGGGTGAAC 104578 >seq913 Length=88738 Score = 105 bits (116), Expect = 8e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| ||| || ||||| || |||| ||||| Sbjct 60974 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCCGGCATCAGGCCCCTCTTCT 60915 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| || || ||| |||||||||||||||||||||||||| ||||| | Sbjct 60914 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATCCCCTCCACGGCGGCGAAAG 60855 Query 127659 CAAATAGACGCTC 127671 | | | |||||| Sbjct 60854 CCACCACACGCTC 60842 Score = 105 bits (116), Expect = 8e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| ||| || ||||| || |||| ||||| Sbjct 73465 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCCGGCATCAGGCCCCTCTTCT 73524 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| || || ||| |||||||||||||||||||||||||| ||||| | Sbjct 73525 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATCCCCTCCACGGCGGCGAAAG 73584 Query 127659 CAAATAGACGCTC 127671 | | | |||||| Sbjct 73585 CCACCACACGCTC 73597 >seq34 Length=1455329 Score = 89.7 bits (98), Expect = 6e-13 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||||| ||||| | |||||||||| |||| ||| ||||| ||||| Sbjct 918644 TAGATGTTGCTGGTGTATGCCTCAATGGACTCATTGTTGCCCAGGATCTGGGCAGTGGAA 918703 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 ||||||||||| || |||| || || || || Sbjct 918704 GCTGTGGGCATTGGGGCCAAAAGGAGACTATT 918735 >seq1698 Length=2458952 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | ||||| || || ||| || || || ||||| || |||| ||||| Sbjct 826487 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGTCCAGGCATTAGGCCCCTCTTCT 826428 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 | |||||| | || ||| |||||| ||||||||||| || ||||||||| Sbjct 826427 TTAACCAGTAGATAGCAGCAAATGAACCAGAGAAGAAAATGCCCTCCACA 826378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613456301908920