Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1696 167 4e-36 >seq1696 Length=952724 Score = 167 bits (184), Expect = 4e-36 Identities = 298/433 (69%), Gaps = 4/433 (1%) Strand=Plus/Minus Query 204178 CAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTT 204237 |||||| ||||||| ||||||||| ||||| |||||||||| |||||| | | |||| | Sbjct 105910 CAGGTGAGGGTTGACGATCTGAAACTCTCCTGACAGCACCCTGCGGGTGTAGATGTTGCT 105851 Query 204238 GGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCAT 204297 |||| | | |||| | |||||||||||| | ||||| |||||| |||||| ||||| Sbjct 105850 GGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTTGGCAT 105791 Query 204298 GGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGT 204357 |||||||| |||||| ||| | ||| |||| ||| |||| | |||||| | | Sbjct 105790 TGGAGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGACCTTCTCCTTCAGCGCCTT 105731 Query 204358 CCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACT 204417 |||||| || | | || || |||||||||| |||| |||||||| | ||| Sbjct 105730 CCAGTCCCACAGGTCCGTTGGCGTCTTCTTCCACATGTCGTACTGGAAGATGCCCTTACT 105671 Query 204418 GACTGGGCTGCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGC 204477 ||| ||| || | ||||||| || || | || | || | || || || Sbjct 105670 GACCGGGGAACCTTCGTACGTCTCGTAGGGGCCGTGTTCGGCGGCTAACTCACAACTCGC 105611 Query 204478 GGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTTTA--ATCTGGCGGCCTCC 204535 ||| || ||||| |||||||||||||| || | ||| | | ||| ||||| Sbjct 105610 CTCCAGAGCAGCGTAGTAAATGGTCTCAAAGATTTGGATGTTGAGCAGCTG--AGCCTCA 105553 Query 204536 GTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATT 204595 | | ||||| | || || || | ||| |||| ||||| || || ||||| ||| Sbjct 105552 GGGCTTTCAAATGGATAACGCATCAGGATAAAGGCGTCAGCCAATCCTTGGACTCCAATT 105493 Query 204596 CCCAACGGTCTGT 204608 || | || |||| Sbjct 105492 CCTATTGGCCTGT 105480 Score = 145 bits (160), Expect = 1e-29 Identities = 578/895 (65%), Gaps = 36/895 (4%) Strand=Plus/Minus Query 204884 TCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGAC 204943 || ||||| || ||||| | ||| | |||||| | ||||| || ||||||||| | Sbjct 105288 TCGACGATTTCTGTGCAGAGGTTGCTGCACTTGATGGTCCCCAGATTCTGCTGGTTGCTC 105229 Query 204944 TTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCGC 205003 || | ||| |||| || ||||||| |||| ||||| | || | || |||| || | Sbjct 105228 TTCCTGTTGCAGGCRTCTTTGTACAGCATGTACGGCGTCCCAGTTTCTGTCTGTGA---C 105172 Query 205004 AGAATG-TGG-GT-CCACAATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGA 205057 |||| ||| || ||||| | |||||| |||| |||| || | |||| | Sbjct 105171 TCAATGATGGCGTACCACAGCTGCTGAGCCTTCACCACACGCTTGAC---CCTCCCCTCC 105115 Query 205058 GACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCT 205114 ||||||| | ||||| ||| || |||| || || | || |||||| |||| Sbjct 105114 TTCTCGTATCTGGTGTAGAGCTCCTCAAACTCCTCCCCCCAGCACTCGTCCA---GCCCG 105058 Query 205115 GGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAAC 205174 || || | ||||||||||| ||||| | || | | |||||||| ||| || Sbjct 105057 GGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCATTATTCTCCACCCTCTTCATGAAG 104998 Query 205175 AGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGG 205234 ||||| |||||||||| |||| || || || | || | | || | ||| | Sbjct 104997 AGGTCAGGGATCCACAGGGCGTAGAAAAGGTCCCTCGCTCGCTGCTCTTCCTTTCCCGTG 104938 Query 205235 TTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGC 205293 ||||| |||| ||||| ||| | | | || ||||| ||||| | ||| ||| Sbjct 104937 TTCTTCTTCAGCTCCAG-GAAGTCAAACACATCAAAATGCCAGGGCTCCAGGTACATGGC 104879 Query 205294 CATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCAC----CATGCGAGTCATCGCGTTGA 205349 | || || || || ||||| || |||||||| || | ||| ||| | |||| Sbjct 104878 GAAGGCTCCGGGTCTTTTGTTGCCCCCCTGGTCGACGTAACGTGC-AGTGTT---GTTGT 104823 Query 205350 AAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGC 205409 | || | |||||| || || || || |||| | ||||| |||| |||| | Sbjct 104822 AGACCCTCAGCATGGGGACGAGCCCATTGGAGCAGCCGTTGGTGCCAGCGATGTAGCTCC 104763 Query 205410 CTTCAGCCCTCACGTTGGAGATGGCCG---CGCCAATCCCGCCAGAACACTTGGCGATCT 205466 || | || | || || || ||| | || || ||||| | | |||| ||| Sbjct 104762 CTGTTGATCT---GATGCAGCTGACCGCTACRCCGATTCCGCCGGCCGATTTGGAGATGA 104706 Query 205467 GGGCGCACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCA 205526 ||||||| | | ||| ||| ||||||||| ||||| |||||| || || | || Sbjct 104705 GGGCGCATTGCTTCAGTGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATTGCAAGCA 104646 Query 205527 GATAGCACGAAGCCAGCT-TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCG 205585 | |||| || ||||| |||| |||||| || || | |||||| || || |||| Sbjct 104645 GGAAGCAGCTAGACAGCTGTGGC-CTGTTGGTTCCAGCATTGAAGAGGGTTGGAGAGGCG 104587 Query 205586 TGGCTGAAGCGCTTCTCGCTCAAACACCTGTAGGTCTCCAGCACGCTCTCCAGATCGAAG 205645 ||| |||| | |||||| || |||||||||| | | || | ||| Sbjct 104586 TGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCGATGGCTGCGTCGATATCCGTC 104527 Query 205646 CCGTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCG 205705 ||||| || || | ||| | ||||||| | |||||| || | ||| |||| | | Sbjct 104526 CCGTGGATTCCCACGGCCACTCTCATGAGCATGTGTTGCGGCCGCTCAGCCACCTTGCTG 104467 Query 205706 TTCACCTTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGG 205760 | | ||| ||||| |||| | ||| || || || | | || |||||| ||| Sbjct 104466 TCAATCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGG 104412 Score = 105 bits (116), Expect = 1e-17 Identities = 112/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| || || | ||||||| | || |||| ||| || ||||| ||||| ||||| Sbjct 106650 CCAGCCATAGAAGTGCATGCTGGTAAGCTTGCCGTAGTTCGGCTCGGCTATGTGGATGTT 106591 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035 |||||||||||| ||||||||||| |||||| || || |||||||| |||| | || | Sbjct 106590 CAGAGACTGGCTCTGGTCGATGAA-GGCGCCACGGTCAGCGGCCATCTTGAGTACTGTTT 106532 Query 204036 TCTGCGAAATCTCCCACACCGTCTT 204060 |||| || ||||||||||| || || Sbjct 106531 TCTGGGAGATCTCCCACACAGTTTT 106507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795089231936720