Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq33 143 3e-29 seq1605 131 2e-25 seq913 116 4e-21 >seq33 Length=2144867 Score = 143 bits (158), Expect = 3e-29 Identities = 168/225 (75%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| ||||| ||||| ||||||||| | || || ||| ||| Sbjct 1190740 ATGCAGATCTTYGTGAAAACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 1190799 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | |||| || |||| || || ||||| |||||| ||||||| Sbjct 1190800 GACACCATTGAGAACG-TGAAAGCTAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCA 1190858 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| ||||| |||||||| || | |||||||| |||||||| Sbjct 1190859 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 1190918 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGG 38467 |||||| ||||| | || || || |||| |||||| | || || Sbjct 1190919 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGTCTCAGGGG 1190963 Score = 143 bits (158), Expect = 3e-29 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| || || ||||| ||||| ||||||||| | || || ||| | Sbjct 1213249 AAAGATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCC 1213308 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || ||||| | | | | | || | ||||||| |||||||| || |||||| | || Sbjct 1213309 CAGCGACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGGATTCCCCCTGA 1213368 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | ||| ||||| |||||||| || | ||||| || ||||| Sbjct 1213369 CCAGCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTGTCTGACTA 1213428 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| ||||| | || || || |||| || ||| |||| || ||| Sbjct 1213429 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTTCTCCGTCTGAGGGGTGGC 1213480 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || || || || || ||||| ||||| ||||||||| | || || ||| | Sbjct 1190280 AAAGATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCC 1190339 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || ||||| | ||| | || | ||||||| ||||| ||||| |||||| | || Sbjct 1190340 CAGCGACACAATTGAAAATGTAAAGGCCAAAATCCAGGACAAGGAGGGCATTCCCCCTGA 1190399 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | || ||||| |||||||| || | |||||||| ||||| Sbjct 1190400 CCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTA 1190459 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| | || || || |||| |||||| | || || || Sbjct 1190460 CAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGTCTCAGGGGTGG 1190510 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| ||||| ||||| ||||||||| | || || ||| ||| | Sbjct 1190512 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 1190571 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | ||||||| |||||||| || ||||| ||||||| Sbjct 1190572 GACACAATTGAAAATGTAAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCCGACCAG 1190631 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| ||||||||| Sbjct 1190632 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 1190691 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || || || | || |||||| | || || ||| Sbjct 1190692 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTCAGGGGTGGC 1190739 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| || || ||||| |||||| | ||||| ||| |||| || | || || || Sbjct 1213717 AAGATCCAGGATAAGGAGGGCATTCCCCCTGACCAGCAGAGGCTGATCTTTGCTGGTAAG 1213776 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | |||||||| |||||||||||||| ||||| | || || || Sbjct 1213777 CAGCTGGAAGATGGACGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTCCAC 1213836 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 |||| |||||| | |||||||| Sbjct 1213837 CTGGTCCTGCGTCTCAGAGGCGG 1213859 >seq1605 Length=404251 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || |||||||| ||||||||| | || || ||| ||| Sbjct 108434 ATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 108375 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||||||||| || || | ||||| Sbjct 108374 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAGGGCATCCCTCCTGACCAG 108315 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| ||||||| | ||| || || |||||||| || | |||||||| |||||||||| Sbjct 108314 CAGAGGCTCATCTTCGCAGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 108255 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || || |||||||||| Sbjct 108254 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCG 108220 >seq913 Length=88738 Score = 116 bits (128), Expect = 4e-21 Identities = 102/126 (81%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||| ||||| || |||||||||||||| ||||||||||| || ||||||| |||||| Sbjct 60370 GCTC-ACCAGGTTCTCGTTGACGATGCCATCGCTGGCGGCAAAGAAGGCCAACACGTGGG 60312 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 |||||| | |||||| | ||| |||| | |||||||| || |||||||||||| | Sbjct 60311 AGATGAAGTAGCGCTCTTCGTCCTTCAGGGTCTCCCAGTGTTGCAGGTCCTTGGACAGAT 60252 Query 133394 CCACCT 133399 |||||| Sbjct 60251 CCACCT 60246 Score = 116 bits (128), Expect = 4e-21 Identities = 102/126 (81%), Gaps = 1/126 (1%) Strand=Plus/Plus Query 133274 GCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCT 133333 |||| ||||| || |||||||||||||| ||||||||||| || ||||||| |||||| Sbjct 74069 GCTC-ACCAGGTTCTCGTTGACGATGCCATCGCTGGCGGCAAAGAAGGCCAACACGTGGG 74127 Query 133334 TGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGT 133393 |||||| | |||||| | ||| |||| | |||||||| || |||||||||||| | Sbjct 74128 AGATGAAGTAGCGCTCTTCGTCCTTCAGGGTCTCCCAGTGTTGCAGGTCCTTGGACAGAT 74187 Query 133394 CCACCT 133399 |||||| Sbjct 74188 CCACCT 74193 Score = 105 bits (116), Expect = 7e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| ||| ||||| |||||| ||| |||| ||| ||||| ||||| | || | Sbjct 60974 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCCGGCATCAGGCCCCTCTTCT 60915 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || |||||||| || ||| || ||||||| ||||| ||||| ||||||| Sbjct 60914 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATCCCCTCCACGGCGGCGAAAG 60855 Query 133037 CCACCAGGCGCTCGCC 133052 |||||| ||||| || Sbjct 60854 CCACCACACGCTCTCC 60839 Score = 105 bits (116), Expect = 7e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| ||| ||||| |||||| ||| |||| ||| ||||| ||||| | || | Sbjct 73465 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCCGGCATCAGGCCCCTCTTCT 73524 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || |||||||| || ||| || ||||||| ||||| ||||| ||||||| Sbjct 73525 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATCCCCTCCACGGCGGCGAAAG 73584 Query 133037 CCACCAGGCGCTCGCC 133052 |||||| ||||| || Sbjct 73585 CCACCACACGCTCTCC 73600 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 ||| |||||||| || || | ||||| |||||||| | ||||||||||||||| || Sbjct 60564 GTACGTGTCGATCAGCAGGCTG--TACATCTCCGAGTGGATGTTCTCCATGGCGATCTGG 60507 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 || ||||| || ||||| ||||| |||||||||||| || | ||| ||||| ||| Sbjct 60506 AAACCGTAGAAACACCGGGCCTCCGTCACCTGCACTTCCTGTGTGAACCGCTCCACC 60450 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGA 133224 ||| |||||||| || || | ||||| |||||||| | ||||||||||||||| || Sbjct 73875 GTACGTGTCGATCAGCAGGCTG--TACATCTCCGAGTGGATGTTCTCCATGGCGATCTGG 73932 Query 133225 AAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 || ||||| || ||||| ||||| |||||||||||| || | ||| ||||| ||| Sbjct 73933 AAACCGTAGAAACACCGGGCCTCCGTCACCTGCACTTCCTGTGTGAACCGCTCCACC 73989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500131304414080