Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1027 313 2e-79 seq1166 98.7 8e-15 seq1454 95.1 9e-14 >seq1027 Length=1617720 Score = 313 bits (346), Expect = 2e-79 Identities = 967/1478 (65%), Gaps = 20/1478 (1%) Strand=Plus/Plus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 ||| || |||| | ||||| ||||| || |||||||| | || || || ||||| || Sbjct 1389974 TTTGTCGACGGCGGATACATTTAGAATGCCGTTGGCATCGATGTCGAAAGTTACTTCTAT 1390033 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 || || || || | ||||||| ||||| ||| | | ||| | |||||| || Sbjct 1390034 CTGTGGAACACCCCGGGGAGCAGGAGGGATACCTGTGAGGTCAAACTTGCCCAGAAGGTT 1390093 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGAT 517427 || ||||| || | || || || || | | || || |||| | | | || | Sbjct 1390094 GTTGTCTTTGGTCATGGCTCTCTCGCCTTCATATACCTGAATCAGTA-CACCTGGCTGGT 1390152 Query 517428 TATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCA 517486 ||||||| || || | || | |||| | | || || ||||| ||||||| | | Sbjct 1390153 TATCTGAGTATGTGGAGAAGA-TCTGAGTCTGCTTGGTGGGGATTGTGGTGTTTCGCTTA 1390211 Query 517487 ATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCA 517546 || | | ||||||| ||| ||||| ||||| | ||| ||||| || |||| ||||| Sbjct 1390212 ATCAGAGGTGTCATAACACCGCCTGCGGTTTCAATACCCAGAGACAGGGGAGCCACATCC 1390271 Query 517547 ACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATA 517606 | || | | || ||| | || || ||| | || | || || || ||||| | Sbjct 1390272 AGCAGCAGCAAATCTTGGACATTCTCTGAAGTGTCGCCCATGAGGATGGCAGCTTGTACT 1390331 Query 517607 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 517666 || |||||||| || ||||||||||| || || | | | || || | ||| ||||| Sbjct 1390332 GCTGCACCATAGGCCACAGCTTCATCTGGGTTGATGCTCTTGTTCAGGTCTTTGCCATTA 1390391 Query 517667 AAAAAATT-TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATAC 517725 ||||| | || |||| || | || ||||| | | || || ||||| | || Sbjct 1390392 AAAAAGTCCTGTAAGAGCTTCTGGATTCTG-GGAATTCTTGTAGAGCCACCAACCAGCAC 1390450 Query 517726 AATTTCATGCA-CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTT 517784 ||||||||| | |||| ||||||||||| || | |||| || |||| ||||| || | Sbjct 1390451 AATTTCATGAATCCTG-GATTTATCCAGCTTGGCATCCTGCAAGGCTTTCTCAACTGGAT 1390509 Query 517785 CAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGA 517844 | || | || || | |||||| || || || || || || || | | | Sbjct 1390510 CCAGTGTTCCCCTGAAAAGATCTGAATTGAGCTCCTCAAAACGCGCCCTTGTGATTGAGG 1390569 Query 517845 CATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAG 517904 | | |||||||||| || || | ||| |||| ||||| | | ||||| || | Sbjct 1390570 TGTAAAAATCAATTCCCTCAAAGAGAGAGTCAATCTCAATGCTTGCCTGAGTGCTGGAGG 1390629 Query 517905 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT 517964 | | | | || || | ||||| ||||| | ||||| | | ||| | || ||| Sbjct 1390630 ACAAGGTCCTCTTTGCTCTCTCACAAGCTGTACGCAGTCTCCTCACTGCTCT--CTTATT 1390687 Query 517965 --GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACG 518022 | | | || | || | |||||| || || ||||| ||| | | || | || Sbjct 1390688 CTGGCTGATGTCCTTCTTGTGTTTTCTTTTAAATTCTTCTACAAAGTGGTTGACCATTCG 1390747 Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 || ||||| || || || || | | || | |||||| || | | |||| | || | Sbjct 1390748 GTTGTCAAAGTCCTCCCCACCAAGGTGTGTGTCTCCTGAAGTGGATTTTACCTCAAAGAT 1390807 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 ||||| |||| | ||| | | || ||| ||| || ||||| | |||||| || || Sbjct 1390808 GCCATCCTCAATGGTCAAGATTGACACGTCAAAGGTGCCTCCACCAAGATCAAAGATCAG 1390867 Query 518143 TACATTCATTTCTTTGTCTTGGTT---TTTATCAAGACCATACGCAAAAGCAGCAGCAGT 518199 || ||| |||| |||| || |||||| || || || |||| || || || || Sbjct 1390868 TATATTGCGTTCTCC-TCTT--TTACCTTTATCCAGGCCGTAGGCAATGGCTGCTGCTGT 1390924 Query 518200 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 518259 || ||||| || || |||| |||||| || |||| || || ||||| || ||||| Sbjct 1390925 GGGCTCATTGATGATCCTCAGAACATTTAGTCCAGAGATCACCCCAGCATCCTTGGTGGC 1390984 Query 518260 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTT 518318 |||||| ||||| || || ||||| || || || || || || |||| | || ||| Sbjct 1390985 TTGTCTCTGTGAGTCATTGAAATAMGCTGGCACTGTGATGACTGCATTTGACACCCTCTG 1391044 Query 518319 TACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTT 518378 | ||| ||| || || | | ||||||||| | | ||| || ||||||| | Sbjct 1391045 TCCCAG-ATAGGCCTCAGCTATCTCCTTCATTTTAACCAGGACCATGGAAGAAATTTCCT 1391103 Query 518379 CTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAA 518438 | || | | ||||| || || || || | | | || || | | Sbjct 1391104 CAGGATAGAACGCCTTGGTCTCCCCTTTGTACTCCACCTGGACTTTGGGCTTTCCATTAT 1391163 Query 518439 CATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAAT 518498 || | || || || || |||||| |||||| || || || ||| || |||||||||| | Sbjct 1391164 CACTGATCACCTTGAAAGGCCAGAGTTTCATGTCAGACTGGACAATTGGGTCATTAAACT 1391223 Query 518499 CTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGAT 518558 ||| ||||| | ||||| |||||||| || || ||| | || || |||||| |||| | Sbjct 1391224 TTCTTCCAATCAGCCGTTTGGCATCAAAGATTGTGTTGTTGGGGTTCATTGCAACTTGGT 1391283 Query 518559 ATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTG 518618 ||||| ||||||||||| || |||||| || ||||| | || || ||||| | Sbjct 1391284 TCTTGGCAGCATCTCCAATGAGCCTTTCTGTGTCAGTAAAGGCCACGTAGCTGGGAGTGG 1391343 Query 518619 TGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 518678 | | ||| || ||||| || ||||| || || ||||| |||| || | || || |||| Sbjct 1391344 TCCTATTGCCCTGATCGTTGGCAATGATCTCTACTTTGCCATGCTGGAAAACCCCAACAC 1391403 Query 518679 AACTAAAAGTTGTTCCTAAATCAATACCAATAGCAATT 518716 | | | || || || | |||||| ||||| | |||| Sbjct 1391404 ATGAATAGGTGGTGCCCAGATCAATGCCAATGGAAATT 1391441 >seq1166 Length=185038 Score = 98.7 bits (108), Expect = 8e-15 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 518530 AGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGT 518589 ||| ||||| || || || ||| | |||| ||||||||||| |||||||| || || Sbjct 112530 AGTGTTGGTGGGGTTCATGGCAACCTGATTCTTGGCTGCATCGCCAATCAGCCTCTCCGT 112471 Query 518590 CTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTC 518649 ||||| || | ||||| || || || | || || || ||||| ||||||||||| Sbjct 112470 ATCTGTGAAGGCCACATAGCTGGGTGTGGTCCTGTTGCCCTGGTCATTGGCAATAATTTC 112411 Query 518650 AACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAA 518708 |||||| |||| || | ||||| ||||| | || || || | ||||||||||| Sbjct 112410 AACTTTGCCATGCTGGAACACACCAACACAGGAGTAGGTGGTCCCAAGATCAATACCAA 112352 >seq1454 Length=76213 Score = 95.1 bits (104), Expect = 9e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| |||||||||||| ||||||||||| | ||||| || || || || |||||||| Sbjct 35657 GCAGACACATTAAGAATGCCATTGGCATCAATGTCAAAGGTCACCTCGATCTGAGGGACT 35716 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 ||||| |||||||||| || || || | ||| | ||||| ||||||| || ||| Sbjct 35717 CCTCTGGGAGCAGGTGGAATACCAGTTAATTCAAACTTCCCCAGGATATTATTGTCCTTA 35776 Query 517379 GT 517380 || Sbjct 35777 GT 35778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780493050197722