Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq1027 334 1e-86 seq1766 178 2e-39 seq1166 172 7e-38 seq1454 150 2e-31 >seq1027 Length=1617720 Score = 334 bits (370), Expect = 1e-86 Identities = 1030/1581 (65%), Gaps = 14/1581 (1%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| ||| |||| |||||||| ||||| || |||||| ||||| |||||||| | | Sbjct 1389864 TCATCGTCAACTTTGTACTTTTCAGCATCCTGTACCATCCGCTCAATCTCTTCTTT-GCT 1389922 Query 6629 AAT-CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 || | ||||| || || || || || || || | ||| || | | || || | Sbjct 1389923 AAGGCGGCCCTTGTCGTTGGTGATGGTGATTTTGTTTTCTTTGCCAGTGCTTTTGTCGAC 1389982 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 || |||||| | ||| || || ||||| | ||||| |||| | || ||||| Sbjct 1389983 GGCGGATACATTTAGAATGCCGTTGGCATCGATGTCGAAAGTTACTTCTATCTGTGGAAC 1390042 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||||| || || | || ||||| || | ||||| | || || | |||| || | Sbjct 1390043 ACCCCGGGGAGCAGGAGGGATACCTGTGAGGTCAAACTTGCCCAGAAGGTTGTTGTCTTT 1390102 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGC 6867 | | | | || |||||||| || | ||| || | || || |||||| Sbjct 1390103 GGTCATGGCTCTCTCGCCTTCATATACCTGAATCAGTACACCTGGCTGGTTATCTGAGTA 1390162 Query 6868 CGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGT 6927 || |||||||| || | ||| | || || || || |||| | ||| | || || Sbjct 1390163 TGTGGAGAAGATCTGAGTCTGCTTGGTGGGGATTGTGGTGTTTCGCTTAATCAGAGGTGT 1390222 Query 6928 CATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAG 6987 ||||| ||| || ||||| | || |||||||| || | ||| |||| || | || Sbjct 1390223 CATAACACCGCCTGCGGTTTCAATACCCAGAGACAGGGGAGCCACATCCAGCAGCAGCAA 1390282 Query 6988 GTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTA 7047 ||||| ||| || || ||| | | |||||| ||||| || | || || || Sbjct 1390283 ATCTTGGACATTCTCTGAAGTGTCGCCCATGAGGATGGCAGCTTGTACTGCTGCACCATA 1390342 Query 7048 TGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGA 7107 || || || ||||| ||||| || | || ||||| ||||| || |||||| | ||| Sbjct 1390343 GGCCACAGCTTCATCTGGGTTGATGCTCTTGTTCAGGTCTTTGCCATTAAAAAAGTCCTG 1390402 Query 7108 TAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCAC 7167 ||| | | || ||| | || |||| ||| || ||||| |||| || ||||||| | Sbjct 1390403 TAAGAGCTTCTGGATTCTGGGAATTCTTGTAGAGCCACCAACCAGCACAATTTCATGAAT 1390462 Query 7168 TTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACG 7227 | |||||||| | ||| | || | | | ||| || || || |||| | | Sbjct 1390463 CCTGGATTTATCCAGCTTGGCATCCTGCAAGGCTTTCTCAACTGGATCCAGTGTTCCCCT 1390522 Query 7228 GAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAAC 7287 ||| | || | || ||||||||||| || | || || || || || ||||||| Sbjct 1390523 GAAAAGATCTGAATTGAGCTCCTCAAAACGCGCCCTTGTGATTGAGGTGTAAAAATCAAT 1390582 Query 7288 GCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTT 7347 || || | | || ||||| |||||| ||| || | | || || || || | ||| Sbjct 1390583 TCCCTCAAAGAGAGAGTCAATCTCAATGCTTGCCTGAGTGCTGGAGGACAAGGTCCTCTT 1390642 Query 7348 TGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTT 7407 ||| | |||||| || || || | | | | || | | || | || || || Sbjct 1390643 TGCTCTCTCACAAGCTGTACGCAGTCTCCTCACTGCTCTCTTATTCTGGCTGATGTCCTT 1390702 Query 7408 CTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTC 7467 ||| ||||| | |||||| ||||| ||||| | | || || || || || Sbjct 1390703 CTTGTGTTTTCTTTTAAATTCTTCTACAAAGTGGTTGACCATTCGGTTGTCAAAGTCCTC 1390762 Query 7468 ACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTT 7527 ||||| | |||||| || || | || | ||| || |||||||| || | |||||| | Sbjct 1390763 CCCACCAAGGTGTGTGTCTCCTGAAGTGGATTTTACCTCAAAGATGCCATCCTCAATGGT 1390822 Query 7528 TAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT-CGTATCGT 7586 || | || || ||||| || || ||||| || ||||| || |||| || ||| || | Sbjct 1390823 CAAGATTGACACGTCAAAGGTGCCTCCACCAAGATCAAAGATCAGTATATTGCGT-TC-T 1390880 Query 7587 CGTCTTTGTTCTT-ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATA 7645 | ||||| ||| ||| || ||||| || || || || || || || ||||| || || Sbjct 1390881 CCTCTTTTACCTTTATCCAGGCCGTAGGCAATGGCTGCTGCTGTGGGCTCATTGATGATC 1390940 Query 7646 CGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCG 7705 | ||| || || |||| || | ||||| || || ||||||| || || || Sbjct 1390941 CTCAGAACATTTAGTCCAGAGATCACCCCAGCATCCTTGGTGGCTTGTCTCTGTGAGTCA 1391000 Query 7706 TTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCC 7765 || || || || || || || | ||| || | | || ||| || ||||| | || Sbjct 1391001 TTGAAATAMGCTGGCACTGTGATGACTGCATTTGACACCCTCTGTCCCAGATAGGCCTCA 1391060 Query 7766 GCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTC 7825 || || || |||||||| || ||||| || ||||| || |||| ||| || Sbjct 1391061 GCTATCTCCTTCATTTTAACCAGGACCATGGAAGAAATTTCCTCAGGATAGAACGCCTTG 1391120 Query 7826 GTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTA 7885 || || || || | || || | | |||| || | | ||| | || ||||| Sbjct 1391121 GTCTCCCCTTTGTACTCCACCTGGACTTTGGGCTTTCCATTATCACTG---ATCACCTTG 1391177 Query 7886 TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGA 7945 | | ||| |||||| || ||||| | |||| |||||||||||| || || Sbjct 1391178 AAAGGCCAGAGTTTCATGTCAGACTGGACAATTGGGTCATTAAACTTTCTTCCAATCAGC 1391237 Query 7946 CGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCC 8005 || || |||||||| | |||||| ||||||||||| || ||||||||| || || || Sbjct 1391238 CGTTTGGCATCAAAGATTGTGTTGTTGGGGTTCATTGCAACTTGGTTCTTGGCAGCATCT 1391297 Query 8006 CCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-GTCGTTCGATTCCC 8064 || || || | ||| | || ||||| || ||||| | |||| || || | ||| || Sbjct 1391298 CCAATGAGCCTTTC---TGTGTCAGTAAAGGCCACGTA-GCTGGGAGTGGTCCTATTGCC 1391353 Query 8065 TTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGT 8124 || ||||| ||||| || ||||| | | | || | || || || || ||||| || Sbjct 1391354 CTGATCGTTGGCAATGATCTCTACTTTGCCATGCTGGAAAACCCCAACACATGAATAGGT 1391413 Query 8125 TGTTCCTAAATCAATACCGAT 8145 || || | |||||| || || Sbjct 1391414 GGTGCCCAGATCAATGCCAAT 1391434 >seq1766 Length=1205356 Score = 178 bits (196), Expect = 2e-39 Identities = 365/540 (68%), Gaps = 2/540 (0%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || ||||| || || ||||| || |||||||| | || |||||||| || || || || Sbjct 829356 GCACCGTAGGCCACTGCCTCGTCAGGGTTAATGCTCTTGTTCAGTTCCTTCCCATTGAAG 829415 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | || | || || || || || || || || || || || || || || Sbjct 829416 AAATCCTGCAGCAGCTTCTGGATCTTGGGAATACGAGTTGAACCTCCCACTAAGACAATG 829475 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 || | | || | || || ||||| | || || || | ||||| || || |||| Sbjct 829476 TCGTGGATTTGAGCCTTGTCCATCTTGGCATCACGGAGAGCCTTTTCCACGGGCTCCAGG 829535 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 | ||||||| || | ||| |||||||| || || | ||| ||||| || ||| Sbjct 829536 GTTCCTCGGAACAGATCTGCATTCAGCTCCTCAAACCGGGCTCTGGTGATGGAGGTGTAG 829595 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 ||||||| ||| ||||| | || || ||||| ||| | | || | | || || | Sbjct 829596 AAATCAATGCCTTCGTACAGAGAGTCGATTTCGATGCTGGCCTGAGTGCTGGATGACAGG 829655 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || ||||| || | ||| || || || || | |||||| | || ||| ||| || Sbjct 829656 GTGCGCTTGGCCCTCTCGCATGCTGTACGCAGACGACGCACCGCCCGCTTGTTGTCGCTG 829715 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGA-GAAGTGTCGAAGGAGTCTCGAATC 7458 || |||||||| | || ||||| ||||| ||| |||||| | | | || Sbjct 829716 ATGTCTTTCTTGTACTTGCGTTTGAACTCGG-AGATGAAGTGATTCACCATCCGGTTGTC 829774 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 || |||||||| ||||||||||| || || || || | || || || ||||| || | Sbjct 829775 AAAGTCTTCACCGCCCAAGTGTGTGTCACCTGCTGTGGACTTCACCTCGAAGATGCCGTC 829834 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 |||||| | | | || |||||||| || ||||||||||||||||| ||||| || || Sbjct 829835 TTCAATTGTCAGTATGGAGACATCAAATGTGCCACCACCCAGGTCAAAGATGAGAACATT 829894 >seq1166 Length=185038 Score = 172 bits (190), Expect = 7e-38 Identities = 362/540 (67%), Gaps = 0/540 (0%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| || || || | || ||||| || || || || || Sbjct 113858 GCTCCATAGGCCACAGCTTCATCTGGATTGATGCTCTTGTTCAGCTCCTTTCCATTGAAG 113799 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | || || || || || ||||| || || || || || ||||| || || Sbjct 113798 AAATCCTGGAGCAGTTTCTGGATCTTGGGGATACGGGTGGAGCCGCCAACCAATACAATA 113739 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | | |||||| ||||| | || || || | || || || || |||| Sbjct 113738 TCATGAATCTGCCCTTTATCCATCTTGGCATCACGGAGGGACTTCTCCACGGGATCCAAG 113679 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||| | ||| | || |||||||| || || | || ||||| || ||| Sbjct 113678 GTGCCACGGAAGAGGTCAGCATTGAGCTCCTCAAAGCGAGCTCTTGTGATGGAGGTGTAG 113619 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || || || || ||||| | || || ||||| ||| | | || | | ||||| | Sbjct 113618 AAGTCCACTCCCTCGTACAGAGAGTCGATTTCTATGCTGGCCTGAGTGCTGGAAGACAGG 113559 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| | |||||| || || || | |||||||| || | | ||| | Sbjct 113558 GTGCGCTTTGCCCTCTCACAAGCAGTGCGCAGACGACGAACAGCCCTCTTGTTGTCACTG 113499 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || || || | || |||||||||||| || |||||| || | | ||| Sbjct 113498 ATGTCCTTTTTGTACTTGCGTTTAAACTCTGCAATGAAGTGGTTAACCATGCGGTTATCA 113439 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || ||||| | || ||||| || || || | ||||| |||||||| || | Sbjct 113438 AAGTCCTCCCCACCAAGATGAGTATCTCCAGCAGTGGACTTGACCTCAAAGATGCCATCC 113379 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 |||||| | || | || ||||| || || |||||||| || ||||| ||||| |||||| Sbjct 113378 TCAATGGTCAAGATAGACACATCGAAGGTGCCACCACCAAGATCAAAGATGAGAACGTTC 113319 >seq1454 Length=76213 Score = 150 bits (166), Expect = 2e-31 Identities = 359/541 (66%), Gaps = 4/541 (1%) Strand=Plus/Plus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || |||||||| || ||||| | ||||| || || || || || Sbjct 36406 GCACCATAGGCAACAGCCTCATCAGGATTAATGCTCTTATTGAGGTCACGGCCATTGAAG 36465 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | || | | | |||||| || ||||| ||||| || ||||| |||| || || Sbjct 36466 AAGTCTTGCAGTAGCTTTTGAATCTTAGGGATACGTGTGGAGCCACCCACCAGGACAATG 36525 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | || | || || ||||| | || | || | || || ||||| || | Sbjct 36526 TCATGGATTTGAGTCTTGTCCATCTTGGCATCCCTTAGAGCCTTCTCCACAGGCTCGAGG 36585 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 | |||||||| ||| | || || |||||||| || | ||| ||||| || ||| Sbjct 36586 GTTCCACGGAACAGGTCTGCATTGAGCTCTTCAAAACGGGCTCTGGTGATGGAAGTGTAG 36645 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTG--TGCCGTCGAAGATA 7337 ||||| | || ||||| | || || || || ||| | | || ||| | | || | Sbjct 36646 AAATCTGCACCTTCGTAGAGTGAGTCGATCTCTATGCTGGCCTGGGTGCTGCTG--GAAA 36703 Query 7338 ACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGG 7397 || |||||||| || || || || || || | |||||| | || ||| ||| | Sbjct 36704 GGGTACGCTTTGCCCGTTCGCAGGCTGTGCGCAGACGACGCACAGCTCGCTTGTTGTTGA 36763 Query 7398 AAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAAT 7457 || || || || || || |||||||| || |||||| || | | | Sbjct 36764 TGATGTCCTTTTTGAACTTGCGCTTAAACTCAGCAATGAAGTGGTTAACCATGCGATTGT 36823 Query 7458 CGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTC 7517 | || || ||||||||||| ||||| || || || || || ||||| |||||||| || Sbjct 36824 CAAAGTCCTCACCACCCAAATGTGTGTCACCGGCTGTGGCCTTGACCTCAAAGATGCCAT 36883 Query 7518 CTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGT 7577 | |||||| | || | ||| ||||| || |||||||| || |||||||| || || || | Sbjct 36884 CCTCAATGGTCAAGATCGACACATCGAAAGTACCACCTCCAAGGTCAAAGATAAGAACAT 36943 Query 7578 T 7578 | Sbjct 36944 T 36944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635080107795080