Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1696 246 4e-60 >seq1696 Length=952724 Score = 246 bits (272), Expect = 4e-60 Identities = 964/1494 (65%), Gaps = 48/1494 (3%) Strand=Plus/Minus Query 105841 CTTCATATCCTTGGACCAAAGACCAATCTTCTTGAGATCATTGACGAGATGCTTGTTGAC 105900 |||||| |||| | ||| || || ||| | | || || |||| || || |||||| Sbjct 105955 CTTCATGTCCTCGCTCCACAGTCCCCTCTCCGTCAGGTCTTTGAGCAGGTGAGGGTTGAC 105896 Query 105901 AATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAGGGTTCAAA 105960 ||| ||||||||| | || || | |||||||| | ||||||| || | Sbjct 105895 GATCTGAAACTCTCCTGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGAT 105836 Query 105961 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 106020 | | || || || |||| ||| || ||||||||||| ||||||||||| |||| || || Sbjct 105835 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTTGGCATTGGAGCCAGCAGCAG 105776 Query 106021 ACTGTTACGAAGACCCTTTTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAG 106080 ||||| | | || | || || ||||| || | | |||||| | | Sbjct 105775 GCTGTTCCTCACGCCGTGTTTGGCGACCTTCTCCTTCAGCGCCTTCCAGTCCCACAGGTC 105716 Query 106081 C-TTGGTTTCACCTTCCCACATATCAAATTG-AAGCACCCCTTGG-GACGTGGGAGAACC 106137 | |||| || ||||| |||| || | || ||| ||||| ||| |||| ||| Sbjct 105715 CGTTGGCGTCTTCTTCC-ACATGTCGTACTGGAAGATGCCCTTACTGACCGGGGA--ACC 105659 Query 106138 CTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 106197 || | ||||| |||| || || | | || || ||||| ||||||||||| | || Sbjct 105658 TTCGTACGTCTCGTAGGGGCCGTGTTCGGCGGCTAACTCACAACTCGCCTCCAGAGCAGC 105599 Query 106198 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 106257 || || ||||| |||||||| | || | | || || ||| ||||||| Sbjct 105598 GTAGTAAATGGTCTCAAAGATTTGGATGTTGAGCAGCTGAGCCTCAGGGCTTTCAAATGG 105539 Query 106258 GTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 106317 || || || ||||| | || || | ||||| || || | || || || ||||| Sbjct 105538 ATAACGCATCAGGATAAAGGCGTCAGCCAATCCTTGGACTCCAATTCCTATTGGCCTGTG 105479 Query 106318 TCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTT 106377 |||||||||||| | || || || || || | ||| |||| || | ||| Sbjct 105478 GCGCATATTAGACCTCTTGGCCTCTTCCACTGGGTAGTAGTTTATGTCGATAATCTTGTT 105419 Query 106378 TAGATTTTTGGTAACAATCTTTGTGATTTCA--TGA-AGTTTTTCATAATCAAAAGTGCG 106434 || ||| || ||||| | || | || || ||||||| | | ||| |||| || Sbjct 105418 TAAGTTTCTG---ACAATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCATAAGTCCG 105362 Query 106435 AGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTC 106494 ||| |||| ||| | || ||||| || |||| |||||| |||||| ||| Sbjct 105361 ---CTCAGGTGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTGCAGACAGCCACCTC 105305 Query 106495 ATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAA 106554 ||||| ||||| || | |||||||| || | |||| | ||| || ||||||| Sbjct 105304 GTCCTTGCTGGTGTATTCGACGATTTCTGTGCAGAGGTTGCTGCACTTGATGGTCCCCAG 105245 Query 106555 ATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGT 106614 ||||| ||||| ||||| ||||||| || || ||||| |||||||| |||||||| || Sbjct 105244 ATTCTGCTGGTTGCTCTTCCTGTTGCAGGCRTCTTTGTACAGCATGTACGGCGTCCCAGT 105185 Query 106615 CTCCGTCTGTGACTTGAGAATTGCCTTCCACACAT-CGGCGGCTGGTACAATGGCGTTGG 106673 || |||||||||| | || || | ||||| | | | | || || || ||| Sbjct 105184 TTCTGTCTGTGACTCAATGATGGCGTACCACAGCTGCTGAGCCTTCACCACACGC-TTGA 105126 Query 106674 CCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCG 106732 ||| |||||| |||||| | |||||||| | ||||||||||| ||| | || ||| Sbjct 105125 CCCTCCCCTCCTTCTCGTATCTGGTGTAGAGCTCCTCAAACTCCTC-CCCCCAGCACTCG 105067 Query 106733 GAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGC 106792 || || || | | | ||||| | || ||||| | || | ||| |||| | Sbjct 105066 TCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCATTATTCTCCACCCTC 105007 Query 106793 TTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCG 106852 |||||||| ||||| || |||||||||| | || || || || || |||||| Sbjct 105006 TTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAAAAGGTCCCTCGCTCGCTGCTCTTCC 104947 Query 106853 TCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAG 106911 | || ||| || | | ||| ||||| || | | ||| ||||| ||||| || Sbjct 104946 TTTCCCGTGTT-CTTCTTCAGCTCCAGGAAGTCAAACACATCAAAATGCCAGGGCTCCAG 104888 Query 106912 ATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGG 106967 || | |||| | ||| |||| | |||| | || | || || || || ||| Sbjct 104887 GTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCC-CCCTGGTCGACGTAACGTGCAGTGT 104829 Query 106968 CGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATAC 107027 ||| | || | ||||| || | | |||| || || || || || Sbjct 104828 TGTTGTAGACCCTCAGCATGGGGACGAGCCCATTGGAGCAGCCGTTGGTGCC-------A 104776 Query 107028 GAGATTTATTGGCTC-----TCACATCATGGATGTG-----CATCCCAATACCCCCAGCC 107077 | ||| || |||| | | | ||| | || | || || || || ||| Sbjct 104775 GCGATGTA---GCTCCCTGTTGATCTGATGCAGCTGACCGCTACRCCGATTCCGCCGGCC 104719 Query 107078 CACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCC 107137 | || ||||| | || || | | | || || | ||||| || | ||| ||| ||| Sbjct 104718 GATTTGGAGATGAGGGCGCATTGCTTCAGTGTGTCGTAGATGCCCTCGATGCTGTCGTCC 104659 Query 107138 TTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGG 107197 || | || | |||||||| || |||| ||| || || || ||||||||||||||| Sbjct 104658 TTCATTGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTGGTTCCAGCATTGAAGAGG 104599 Query 107198 GTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGA 107256 ||||| | ||||| ||||| || | | |||| | || ||| ||||| | | | | Sbjct 104598 GTTGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGCAGGTTGTAGGTCTCGATGGCTGC 104540 Query 107257 ATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACATGTATTGGGG 107310 || || || ||||||||| || | |||||| | ||| | ||||| ||| || Sbjct 104539 GTCGATATCCGTCCCGTGGATTCCCACGGCCACTCTCATGAGCATGTGTTGCGG 104486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589931853717880