Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq34 104 3e-17 seq1698 93.3 5e-14 >seq34 Length=1455329 Score = 104 bits (114), Expect = 3e-17 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 47906 TACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGT 47965 |||||||| | | || || | || ||||| | |||||||| | ||||||| || Sbjct 919596 TACCTCATCTTTGCTCGTGTACTCTACGATTTCTGTGCATAGATTGCTGGATTTGATGGT 919655 Query 47966 ACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGT 48025 |||| |||||| ||||| | |||| || || ||||||||||||||| | || || Sbjct 919656 GCCCAGATTTTGCTGATTGCTCTTCCTGTTGCAGGCATCCTTGTAAAGCATATATGGCGT 919715 Query 48026 TCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAA 48063 ||||||||| |||| ||||||||||||| | ||||| Sbjct 919716 ACCAGTTTCTGTCTGCGATTCAATGATAGTGTACCAAA 919753 >seq1698 Length=2458952 Score = 93.3 bits (102), Expect = 5e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 ||||||| || || || | || || || | || | |||||||| || || || || | Sbjct 826487 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGTCCAGGCATTAGGCCCCTCTTCT 826428 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 |||||||| | |||| ||||||||| ||||| ||||| || || || || |||||||||| Sbjct 826427 TTAACCAGTAGATAGCAGCAAATGAACCAGAGAAGAAAATGCCCTCCACAGCTGCAAAAG 826368 Query 19103 CAACTAGTCTTTCTCC 19118 | || | ||| || || Sbjct 826367 CCACAATTCTCTCCCC 826352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562062166048680