Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1027 219 3e-51 seq1454 116 3e-20 seq1166 107 2e-17 >seq1027 Length=1617720 Score = 219 bits (242), Expect = 3e-51 Identities = 554/833 (67%), Gaps = 12/833 (1%) Strand=Plus/Minus Query 551757 GAAGATGGTCTCTTTTCTGTATTAGCTACTAGTGGAGATTCTCATCTTGGTGGCGAAGAT 551816 || ||||| ||||| ||| | | ||| ||||| | || |||||||| || || Sbjct 1390816 GAGGATGGCATCTTTGAGGTAAAATCCACTTCAGGAGACACACACCTTGGTGGGGAGGAC 1390757 Query 551817 TTTGATAATAGACTGGT--ATCATGGTGTGTTGAAGATTTTAAACGAAAAAACAA--AGT 551872 ||||| || || |||| | || | ||| ||||| |||||| ||||| |||| || Sbjct 1390756 TTTGACAACCGAATGGTCAACCAC--TTTGTAGAAGAATTTAAAAGAAAACACAAGAAGG 1390699 Query 551873 TGATCTATCTACATCTGCCAAAGCTCTTCGTCGTCTAAGAACTGCTTGCGAAAGAGCCAA 551932 ||| | || | | ||| | | | || | || ||||| || ||||| || Sbjct 1390698 ACATCAGCCAGAATAAG--AGAGCAGTGAGGAGACTGCGTACAGCTTGTGAGAGAGCAAA 1390641 Query 551933 -ACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAA 551991 | || || | || || | ||||| | | ||||| | || || | |||||||||| Sbjct 1390640 GAGGACCT-TGTCCTCCAGCACTCAGGCAAGCATTGAGATTGACTCTCTCTTTGAGGGAA 1390582 Query 551992 TTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTA 552051 |||||| | | || | || | ||||| ||||| || | ||| ||||| || | Sbjct 1390581 TTGATTTTTACACCTCAATCACAAGGGCGCGTTTTGAGGAGCTCAATTCAGATCTTTTCA 1390522 Query 552052 GAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAG 552111 | |||| | || ||||| || ||| || ||| | ||| | |||||||||| Sbjct 1390521 GGGGAACACTGGATCCAGTTGAGAAAGCCTTGCAGGATGCCAAGCTGGATAAATCCAGGA 1390462 Query 552112 TACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAATGTTA- 552170 | |||||||||||||| |||||||| |||||||||||||| | ||| | | | ||| Sbjct 1390461 TTCATGAAATTGTGCTGGTTGGTGGCTCTACAAGAATTCCCAGAATCCAGAAGCTCTTAC 1390402 Query 552171 AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCC 552230 || ||| ||| ||||| ||| | | || | || | || |||||||| ||||| ||| Sbjct 1390401 AGGACTTTTTT-AATGGCAAAGACCTGAACAAGAGCATCAACCCAGATGAAGCTGTGGCC 1390343 Query 552231 TATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAAT 552290 |||||||| ||| | ||||| || || || || | ||| || || | ||| || Sbjct 1390342 TATGGTGCAGCAGTACAAGCTGCCATCCTCATGGGCGACACTTCAGAGAATGTCCAAGAT 1390283 Query 552291 ATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATG 552350 | | || | ||||| |||| || ||||| ||| | ||||| | || ||| ||||| Sbjct 1390282 TTGCTGCTGCTGGATGTGGCTCCCCTGTCTCTGGGTATTGAAACCGCAGGCGGTGTTATG 1390223 Query 552351 ACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACG 552410 || ||| || | |||| || || || || || | ||| | || || || Sbjct 1390222 ACACCTCTGATTAAGCGAAACACCACAATCCCCACCAAGCAGACTCAGATCTTCTCCACA 1390163 Query 552411 TATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACT 552470 || |||||||| || | | ||| ||||| | | |||||| || ||| | || Sbjct 1390162 TACTCAGATAACCAGCCAGGTGTACTGATTCAGGTATATGAAGGCGAGAGAGCCATGACC 1390103 Query 552471 AAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGA 552530 ||||| || || | || || | ||| | | |||||| ||||||||||| || || Sbjct 1390102 AAAGACAACAACCTTCTGGGCAAGTTTGACCTCACAGGTATCCCTCCTGCTCCCCGGGGT 1390043 Query 552531 GTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGAATGT 552583 || || || || ||||| |||||||| ||||||||||| || ||| | ||||| Sbjct 1390042 GTTCCACAGATAGAAGTAACTTTCGACATCGATGCCAACGGCATTCTAAATGT 1389990 Score = 168 bits (186), Expect = 5e-36 Identities = 396/594 (67%), Gaps = 14/594 (2%) Strand=Plus/Minus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||| | || ||||| ||| |||||||| |||| || |||| ||||| Sbjct 1391434 ATTGGCATTGATCTGGGCACCACCTATTCATGTGTTGGGGTTTTCCAGCATGGCAAAGTA 1391375 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || || |||||||| ||||| || || || || ||||| || || | || || || Sbjct 1391374 GAGATCATTGCCAACGATCAGGGCAATAGGACCACTCCCAGCTACGTGGCCTTTACTGAC 1391315 Query 550115 ACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGC--CACTGGTAATCCTACCAATA 550172 || ||| | |||| ||||| || || | |||| || || || || | ||| | Sbjct 1391314 ACAGAAAGGCTCATTGGAGATGCTGCCAAGAACCAAGTTGCAATG--AACCCCAACAACA 1391257 Query 550173 CTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAG 550232 | || |||||||| ||||| | |||||||||| |||||||| | | ||| ||| | | Sbjct 1391256 CAATCTTTGATGCCAAACGGCTGATTGGAAGAAAGTTTAATGACCCAATTGTCCAGTCTG 1391197 Query 550233 ATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATAT-----TGA 550287 | ||||| | ||||||||| | | | | || | |||||| || | | || Sbjct 1391196 ACATGAAACTCTGGCCTTTCAAGGTGATCAGTGATAATGGAAAGCCCAAAGTCCAGGTGG 1391137 Query 550288 AGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTT 550347 || ||| | | || | || || | || || ||||||| || ||||| | Sbjct 1391136 AG-TACAAAGGGGAGACC----AAGGCGTTCTATCCTGAGGAAATTTCTTCCATGGTCCT 1391082 Query 550348 AATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAAT 550407 | |||||||| | | ||| || | | | || || || | ||||||| || Sbjct 1391081 GGTTAAAATGAAGGAGATAGCTGAGGCCTATCTGGGACAGAGGGTGTCAAATGCAGTCAT 1391022 Query 550408 AACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTAT 550467 || || ||||| ||||| ||||||||||| | ||||| || || |||||||| || Sbjct 1391021 CACAGTGCCAGCKTATTTCAATGACTCACAGAGACAAGCCACCAAGGATGCTGGGGTGAT 1390962 Query 550468 TGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 ||||||| |||||||| | || |||||||| || || || || || |||| || || Sbjct 1390961 CTCTGGACTAAATGTTCTGAGGATCATCAATGAGCCCACAGCAGCAGCCATTGCCTACGG 1390902 Query 550528 ACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGATTGTGGAGG 550581 || |||||| ||| ||||| ||| |||| ||||||||| ||| || Sbjct 1390901 CCTGGATAAAGGTAAAAGAGGAGAACGCAATATACTGATCTTTGATCTTGGTGG 1390848 >seq1454 Length=76213 Score = 116 bits (128), Expect = 3e-20 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 ||||||| | || || ||||| || || ||||| || |||||||||||||| ||||||| Sbjct 37170 ATGCAGTTGTTACAGTTCCAGCTTACTTCAATGATTCCCAACGTCAAGCTACCAAAGATG 37111 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| || |||| |||||||| || || || |||||||| || |||||||| || Sbjct 37110 CTGGAACCATCTCTGGGCTTAATGTGCTGCGCATCATCAATGAGCCCACTGCTGCAGCTA 37051 Query 550518 TTGCATATGGACTTGATAA 550536 |||| ||||| || || || Sbjct 37050 TTGCTTATGGCCTGGACAA 37032 >seq1166 Length=185038 Score = 107 bits (118), Expect = 2e-17 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||||| || || || || || || |||||||| || ||||| || || || |||| Sbjct 113074 ATGCTGTAATCACAGTGCCCGCTTACTTCAATGACTCTCAGCGTCAGGCCACAAAGGATG 113133 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 |||| || |||| || |||||||| ||||| |||||||| || ||||||||||| Sbjct 113134 CTGGCACCATCTCTGGCCTCAATGTTCTGCGTATCATCAATGAGCCAACTGCTGCTGCCA 113193 Query 550518 TTGCATATGGACTTGATAA 550536 |||| |||||| | || || Sbjct 113194 TTGCTTATGGATTGGACAA 113212 Score = 91.5 bits (100), Expect = 1e-12 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 ||| ||||| |||||||||||||| || || || |||||||| || || ||||| ||||| Sbjct 114920 AGGCATTCCCCCTGCTCCTCGTGGCGTTCCCCAGATTGAAGTGACATTTGATATTGATGC 114979 Query 552566 CAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 |||||| || ||||||| ||||| |||||| Sbjct 114980 CAATGGCATCATGAATGTCTCTGCTGTTGATAA 115012 Score = 86.0 bits (94), Expect = 5e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||| | || ||||| || ||||||||||| | || |||| ||||||||| Sbjct 112354 GGTATTGATCTTGGGACCACCTACTCCTGTGTTGGTGTGTTCCAGCATGGCAAAGTTGAA 112413 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 |||||||||||||| || || ||||| || || || ||||| | ||||| || || Sbjct 112414 ATTATTGCCAATGACCAGGGCAACAGGACCACACCCAGCTATGTGGCCTTCACAGATACG 112473 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCA 550149 || | |||| |||||||| || |||| Sbjct 112474 GAGAGGCTGATTGGCGATGCAGCCAAGAATCA 112505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028945005507130