Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1696 273 4e-68 seq913 114 2e-20 seq1698 98.7 2e-15 >seq1696 Length=952724 Score = 273 bits (302), Expect = 4e-68 Identities = 1031/1603 (64%), Gaps = 67/1603 (4%) Strand=Plus/Minus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 ||| || || |||| || |||||||| ||| | |||| || ||| ||| || | Sbjct 105952 CATGTCCTCGCTCCACAGTCCCCTCTCCGTCAGGTCTTTGAGCAGGTGAGGGTTGACGAT 105893 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 || || ||||| || |||||||| | ||| | ||| ||| | | |||||| Sbjct 105892 CTGAAACTCTCCTGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGA 105833 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| || ||| ||| || ||||| || |||| |||||| || Sbjct 105832 CTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTTGGCATTGGAGCCAGCAGCAGGCT 105773 Query 221245 GTTGCGCAGTCCGAATCTATTGATGGACTT-TC--TCAGCGTGTTCCAGTCACAGTGTCC 221301 ||| | || ||| | ||| | ||| || |||||| |||||||| || Sbjct 105772 GTTCCTCACGCCGTGT---TTGGCGACCTTCTCCTTCAGCGCCTTCCAGTCCCA------ 105722 Query 221302 TCCCAGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTAGACACCGG 221361 |||||| ||| ||||| Sbjct 105721 ---CAGGTCCGTTGGCGTCTTCTTCCACATGTCGTACTGGAAGATGCCCTTACTGACCGG 105665 Query 221362 ACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGC--CTGGGCGCAAGACT-GCGT 221418 || ||||||| ||||||||| |||| ||||||| || | || ||| || | Sbjct 105664 GGAACCTTCGTACGTCTCGTAGGGGCCGT---GTTCGGCGGCTAA-CTCACAACTCGCCT 105609 Query 221419 C-AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAG 221477 | || ||||||| ||| |||||||||||||| ||||||| || ||||| || | Sbjct 105608 CCAGAGCAGCGTAGTAAATGGTCTCAAAGATTTGGATGTTGAGCAGCTGAGCCTCAGG-G 105550 Query 221478 AAGTGAAGGGCATA-CGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCG 221536 | || | ||| |||| || |||| |||| |||| ||| || ||||| || || Sbjct 105549 CTTTCAAATGGATAACGCATCAGGATAAAGGCGTCAGCCAATCCTTGGACTCCAATTCCT 105490 Query 221537 ATGGGCCTGTGTCTCCTGTTGGAAGC---GGCCGCTTCTGGCACGGGATAAAAGTTGACG 221593 || |||||||| | | | || || |||| |||| ||| || || |||| | | Sbjct 105489 ATTGGCCTGTGGCGCATATTAGACCTCTTGGCCTCTTC---CACTGGGTAGTAGTTTATG 105433 Query 221594 TCGATCAGATTGTTGAGGTT-CAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTG 221652 ||||| | ||||| | ||| | || || ||||| ||| | ||| || Sbjct 105432 TCGATAATCTTGTTTAAGTTTCTGACA-ATTACTTTGGTCACAGATGCCAGTTT------ 105380 Query 221653 ATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCT 221712 || || || |||| || ||| || | | | | || || || | | Sbjct 105379 -TTTAAAGTCATAAGTCCGC--TC----AGGTGTGACGTACATG--TTGAGAGCGATGGA 105329 Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 |||||| || || || ||||||||||||||| |||| || | | ||| ||||| ||||| Sbjct 105328 GGCCAGATTGCAGACAGCCACCTCGTCCTTGCTGGTGTATTCGACGATTTCTGTGCAGAG 105269 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 |||||||||||||||||||||||| | | || || ||| | ||| || || || Sbjct 105268 GTTGCTGCACTTGATGGTCCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCRTCTTT 105209 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| ||||| | || ||||| || ||| | | | | || || ||| || | Sbjct 105208 GTACAGCATGTACGGCGTCCCAGTTTCTGTCTGTGACTCAATGATGGCGTACCACAGCTG 105149 Query 221893 TCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951 ||| || ||||| | |||||| ||||| ||| || || | ||| |||||| Sbjct 105148 -CTGAGCCTTCACCACACGCTTGACCCTCCCCTC---CTTCTCGTATCTGGTGTAGAGCT 105093 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGAC 222011 ||||||| || || | ||||||||| || || || ||| ||||||||||| Sbjct 105092 CCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCAGTCGGCCGGACACATCAGGG 105033 Query 222012 TCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAA 222071 ||||| | || | | ||||||| |||||||||||| ||||||||||| || | | Sbjct 105032 ACCAGTCTTCATTATTCTCCACCCTCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGA 104973 Query 222072 AGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAA 222131 | || || || | |||||||| ||| || |||| ||| |||| |||| || |||| Sbjct 104972 AAAGGTCCCTCGCTCGCTGCTCTTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAA 104913 Query 222132 AAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCAC 222191 | | ||| ||||| |||||||| || | ||| | || ||||||| |||||||| | Sbjct 104912 ACACATCAAAATGCCAGGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCCC 104853 Query 222192 CCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTG 222250 |||| || | | | | ||| | |||| ||| | || | || || || || ||| Sbjct 104852 CCTGGTCGA-CGTAACGTGCAGTGTTGTTGTAGACCCTCAGCATGGGGACGAGCCCATTG 104794 Query 222251 GATCGACCGTTGGTGCCCTTAATGTACGCACCGCCG--GCCCTCAGGTTACTGGCAGACA 222308 || | ||||||||||| ||||| || || | | | || | | ||| | | | Sbjct 104793 GAGCAGCCGTTGGTGCCAGCGATGTA-GCTCC-CTGTTGATCTGATGCAGCTGACCGCTA 104736 Query 222309 TGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGC 222368 ||||| || ||||| ||| ||||| | |||||| ||| || ||||| ||||| Sbjct 104735 CRCCGATTCCGCCGGCCGATTTGGAGATGAGGGCGCATTGCTTCAGTGTGTCGTAGATGC 104676 Query 222369 CCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGG 222428 |||| || ||| ||||| | ||||| || || |||| ||| | || ||| Sbjct 104675 CCTCGATGCTGTCGTCCTTCATTGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTGG 104616 Query 222429 AACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGT 222488 | || || || || || ||| |||||| || || | | |||| ||| | || Sbjct 104615 TTCCAGCATTGAAGAGGGTTGGAGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGT 104556 Query 222489 ACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACA 222548 | ||||| | | || | |||| | |||||| || || ||| ||||||| || Sbjct 104555 AGGTCTCGATGGCTGCGTCGATATCCGTCCCGTGGATTCCCACGGCCACTCTCATGAGCA 104496 Query 222549 TGTACTGGGGCCTCTCCACAGGACCCTTGGAG---CTGGAGAGCAGGTACGATTTTTCCA 222605 ||| || |||| || ||| ||||| | | |||||||| || |||| Sbjct 104495 TGTGTTGCGGCCGCT---CAGCCACCTTGCTGTCAATCTTCAGCAGGTAGGAGCGCTCCA 104439 Query 222606 GAGTCTTGAACCCAAAGTAGTTG-AGGTCAAAGTCTCTGCCGT 222647 |||||||||| || ||| ||||| ||| ||| |||||| ||| Sbjct 104438 GAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAA-TCTCTGTCGT 104397 >seq913 Length=88738 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| || || || || |||||||| ||||| ||| || || ||||| Sbjct 60839 GGAGAGCGTGTGGTGGCTTTCGCCGCCGTGGAGGGGATCTTCTTCTCTGGCTCCTTTGCC 60898 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||| ||| ||| ||| ||||| || ||| ||| |||||||||||| Sbjct 60899 GCCATCTTCTGGCTGAAGAAGAGGGGCCTGATGCCGGGCCTGACCTTCTCCAACGAGCTC 60958 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 60959 ATCAGCAGAGACGAGG 60974 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| || || || || |||||||| ||||| ||| || || ||||| Sbjct 73600 GGAGAGCGTGTGGTGGCTTTCGCCGCCGTGGAGGGGATCTTCTTCTCTGGCTCCTTTGCC 73541 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 |||||||||||||| ||| ||| ||| ||||| || ||| ||| |||||||||||| Sbjct 73540 GCCATCTTCTGGCTGAAGAAGAGGGGCCTGATGCCGGGCCTGACCTTCTCCAACGAGCTC 73481 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 73480 ATCAGCAGAGACGAGG 73465 >seq1698 Length=2458952 Score = 98.7 bits (108), Expect = 2e-15 Identities = 96/124 (77%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 25885 GTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGG 25944 || || ||||| |||||||||||||| || ||| ||||| ||||| || |||| |||| Sbjct 826364 GTGGCTTTTGCAGCTGTGGAGGGCATTTTCTTCTCTGGTTCATTTGCTGCTATCTACTGG 826423 Query 25945 CTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGAC 26004 | ||| ||| ||| ||||| || || || |||||||||||||| ||||||||| Sbjct 826424 TTAAAGAAGAGGGGCCTAATGCCTGGACTTACCTACTCCAACGAGCTCATTAGCAGGGAC 826483 Query 26005 GAGG 26008 |||| Sbjct 826484 GAGG 826487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928767740713280