Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1027 192 4e-43 seq1454 113 3e-19 >seq1027 Length=1617720 Score = 192 bits (212), Expect = 4e-43 Identities = 377/553 (68%), Gaps = 6/553 (1%) Strand=Plus/Minus Query 474324 GAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATG 474383 ||||| | ||||| |||||| | || || || || ||||| | |||| || ||| Sbjct 1391442 GAATTTCCATTGGCATTGATCTGGGCACCACCTATTCATGTGTTGGGGTTTTCCAGCATG 1391383 Query 474384 GTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTT 474443 | |||||||| || |||||||| || || || ||||| || || || || || | | Sbjct 1391382 GCAAAGTAGAGATCATTGCCAACGATCAGGGCAATAGGACCACTCCCAGCTACGTGGCCT 1391323 Query 474444 TTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTG 474503 ||||||| || ||| || |||||||||||||| || | |||| |||| || || Sbjct 1391322 TTACTGACACAGAAAGGCTCATTGGAGATGCTGCCAAGAACCAAGTTGCAATGAACCCCA 1391263 Query 474504 TTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCC 474563 || || || |||||||| ||| | ||||||| | || ||| |||| | | ||||| Sbjct 1391262 ACAACACAATCTTTGATGCCAAACGGCTGATTGGAAGAAAGTTTAATGACCCAATTGTCC 1391203 Query 474564 AATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATATAT 474621 | ||||| ||| | |||||||| |||||||| | || | ||| || || | | Sbjct 1391202 AGTCTGACATGAAACTCTGGCCTTTCAAGGTGATCAGTGATAATGGAAAGCCCAAAGTCC 1391143 Query 474622 AGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGT 474681 || | | |||| ||| || || || || | || || |||||||||| ||||| Sbjct 1391142 AGGTGGAGTACA--AAGGGGAGACCAAGGCGTTCTATCCTGAGGAAATTTCTTCCATGGT 1391085 Query 474682 TTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAG 474740 | | |||||||| | | || ||| | ||||| ||||| || | |||||| Sbjct 1391084 CCTGGTTAAAATGAAGGAGATAGCTGAG-GCCTATCTGGGACAGAGGGTGTCAAATGCAG 1391026 Query 474741 TAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAA 474800 | || || || ||||| ||||| ||||| || || | ||||| || || ||||| || Sbjct 1391025 TCATCACAGTGCCAGCKTATTTCAATGACTCACAGAGACAAGCCACCAAGGATGCTGGGG 1390966 Query 474801 GAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTT 474860 || | || || |||||| | | || || ||||| || |||||||| || |||| | Sbjct 1390965 TGATCTCTGGACTAAATGTTCTGAGGATCATCAATGAGCCCACAGCAGCAGCCATTGCCT 1390906 Query 474861 ATGGTCTTGATAA 474873 | || || ||||| Sbjct 1390905 ACGGCCTGGATAA 1390893 Score = 167 bits (184), Expect = 2e-35 Identities = 422/627 (67%), Gaps = 16/627 (3%) Strand=Plus/Minus Query 475548 TTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAAT 475607 |||| |||| ||||| ||||| |||||||||| | | || || |||||||| | Sbjct 1390608 TTGAGATTGACTCTCTCTTTGAGGGAATTGATTTTTACACCTCAATCACAAGGGCGCGTT 1390549 Query 475608 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT-C 475666 |||| || | ||| ||||| || || |||| | || || ||||| ||| | | Sbjct 1390548 TTGAGGAGCTCAATTCAGATCTTTTCAGGGGAACACTGGATCCAGTTGAGAAAGCCTTGC 1390489 Query 475667 AGAGATTCTAAACTTGACAAATCACAAG-TCCATGAAATTGTTCTTGTAGGAGGTTCAAC 475725 || ||| | || || || ||||| || | | ||||||||||| || || || || || || Sbjct 1390488 AG-GATGCCAAGCTGGATAAATC-CAGGATTCATGAAATTGTGCTGGTTGGTGGCTCTAC 1390431 Query 475726 AAGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATG 475784 ||||||||| | ||| |||| ||| || | | ||||||||| ||| | | || Sbjct 1390430 AAGAATTCCCAGAAT-CCAGAAGCTCTTACAGGACTTTTTTAATGGCAAAGACCTGAACA 1390372 Query 475785 AAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTAT-TTTA 475843 | || | || || ||||||||||| || ||||| || || || ||||| || || | | Sbjct 1390371 AGAGCATCAACCCAGATGAAGCTGTGGCCTATGGTGCAGCAGTACAAGCTGCCATCCTCA 1390312 Query 475844 TCAG-GTCA-ATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTT 475901 | | | || ||| ||||| | | || | | || | || || |||| || | Sbjct 1390311 TGGGCGACACTTCA---GAGAATGTCCAAGATTTGCTGCTGCTGGATGTGGCTCCCCTGT 1390255 Query 475902 CATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTA 475961 | | ||| ||||||| | || || ||||||| ||| ||| | |||| || | | Sbjct 1390254 CTCTGGGTATTGAAACCGCAGGCGGTGTTATGACACCTCTGATTAAGCGAAACACCACAA 1390195 Query 475962 TCCCATGCAA--AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAAC 476019 |||| ||| | | ||| | | || ||||| || || ||||| || || |||| Sbjct 1390194 TCCCCACCAAGCAGACTCAGA--TCTTCTCCACATACTCAGATAACCAGCCAGGTGTACT 1390137 Query 476020 CATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTT 476079 || || | | |||||| || ||| | || ||||| || ||| || || | || Sbjct 1390136 GATTCAGGTATATGAAGGCGAGAGAGCCATGACCAAAGACAACAACCTTCTGGGCAAGTT 1390077 Query 476080 TAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGA 476139 | | || |||||| |||||||||||| | || ||||| || || ||||| ||||| || Sbjct 1390076 TGACCTCACAGGTATCCCTCCTGCTCCCCGGGGTGTTCCACAGATAGAAGTAACTTTCGA 1390017 Query 476140 TATTGATGCAAATGGTATTCTTAATGT 476166 || ||||| || || ||||| ||||| Sbjct 1390016 CATCGATGCCAACGGCATTCTAAATGT 1389990 >seq1454 Length=76213 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 ||||||| |||| |||||||| || || |||||||| ||||||||||| || ||||||| Sbjct 37170 ATGCAGTTGTTACAGTTCCAGCTTACTTCAATGATTCCCAACGTCAAGCTACCAAAGATG 37111 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| || | || |||||||| | || || || ||||| || || || || || Sbjct 37110 CTGGAACCATCTCTGGGCTTAATGTGCTGCGCATCATCAATGAGCCCACTGCTGCAGCTA 37051 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 |||||||||| || || ||||| Sbjct 37050 TTGCTTATGGCCTGGACAAGAA 37029 Score = 105 bits (116), Expect = 4e-17 Identities = 110/142 (77%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGG-AACTTTTAATCTTGAAG 476090 ||||||||| ||| | ||||| || ||||| | || || || ||| ||| | | Sbjct 35797 TGAAGGTGAGAGAGCCATGACTAAGGACAATAATATCCTGGGGAAGTTTGAAT-TAACTG 35739 Query 476091 GTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAA 476150 ||||||| ||||||||||||||||| ||||| || || || || ||||| |||||||| | Sbjct 35738 GTATTCCACCTGCTCCCAGAGGAGTCCCTCAGATCGAGGTGACCTTTGACATTGATGCCA 35679 Query 476151 ATGGTATTCTTAATGTTACTGC 476172 |||| ||||||||||| |||| Sbjct 35678 ATGGCATTCTTAATGTGTCTGC 35657 Score = 96.9 bits (106), Expect = 2e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||| | ||||||||| | || || || || ||||| | | | || |||| ||| Sbjct 38098 GCAGTGGGTATTGATCTGGGTACCACATATTCCTGTGTGGGAATCTTCCAGCATGGCAAA 38039 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 ||||| || ||||||||||||||||| || || |||||||| ||||| |||| || Sbjct 38038 GTAGAGATCATTGCCAATGACCAAGGAAACAGGACAACACCCAGCTATGTGGCTTTCACA 37979 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAA 474481 || || || ||||||||||||||||||||| Sbjct 37978 GACACAGAGAGACTTATTGGAGATGCTGCTAAA 37946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267894506867276