Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq1696 239 5e-58 seq34 109 7e-19 >seq1696 Length=952724 Score = 239 bits (264), Expect = 5e-58 Identities = 959/1487 (64%), Gaps = 48/1487 (3%) Strand=Plus/Plus Query 75219 ACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTCTTGGAGA 75278 ||||| ||||| | || || | || ||||||||| || || || | | | | |||| Sbjct 104493 ACATGCTCATGAGAGTGGCCGTGGGAATCCACGGGACGGATATCGACGCAGCCATCGAGA 104552 Query 75279 CATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTTCAATGCT 75337 | ||| || | |||| | | || ||||| ||||| | |||||||||||||||||| Sbjct 104553 CCTACAACCTGCTGTCGGAGAAGTG-GTTCACCCACGCCTCTCCAACCCTCTTCAATGCT 104611 Query 75338 GGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGACTCAATC 75397 || || || || ||| |||| || |||||||| | || | ||||| ||| ||| Sbjct 104612 GGAACCAACAGGCCACAGCTGTCTAGCTGCTTCCTGCTTGCAATGAAGGACGACAGCATC 104671 Query 75398 AACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATT 75457 | || ||||| | || || | | | || || | ||||| || | ||| || || || Sbjct 104672 GAGGGCATCTACGACACACTGAAGCAATGCGCCCTCATCTCCAAATCGGCCGGCGGAATC 104731 Query 75458 GGGATG-----CACATCCATGATGTGA-----GAGCCAATAAATCTCGTATTCGGGGGAC 75507 || | || | ||| | | | |||| || ||| | || || Sbjct 104732 GGYGTAGCGGTCAGCTGCATCAGATCAACAGGGAGC---TACATCGCT-------GGCAC 104781 Query 75508 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 75567 || || || |||| | | || ||||| | || | ||| ||| || || || Sbjct 104782 CAACGGCTGCTCCAATGGGCTCGTCCCCATGCTGAGGGTCTACAACAACACTGCACGTTA 104841 Query 75568 TGTAAATCAAGCGGGGCGTCGCAAG----GGGTCCATCGCGGTCTACTTGGAACCATGGC 75623 || | || | ||||| | ||| || || |||| | ||| |||| || |||| Sbjct 104842 CGTCGACCAGG-GGGGCAACAAAAGACCCGGAGCCTTCGCCATGTACCTGGAGCCCTGGC 104900 Query 75624 ATGCCGATATCATGGAGTTCCTTGAGTT-ACGACTCAACCAAGGTGACGAAGAGGCTCGG 75682 || ||| | | || ||||| ||| | | || ||| || | |||||| || Sbjct 104901 ATTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAG-AACACGGGAAAGGAAGAGCAGCGA 104959 Query 75683 TGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAG 75742 || || || || | |||||||||| || ||||| ||||||||| |||| ||| | Sbjct 104960 GCGAGGGACCTTTTCTACGCCCTGTGGATCCCTGACCTCTTCATGAAGAGGGTGGAGAAT 105019 Query 75743 GGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGG 75801 || | ||||| || | ||||| | | | || || || ||| || | ||| Sbjct 105020 AATGAAGACTGGTCCCTGATGTGTCCGGCCGACTGCCCCGGGCTGGACGAGTGCTGGGGG 105079 Query 75802 TGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACTGT 75861 ||||||||||| | |||||||| | || || ||||||| || | ||| ||| || Sbjct 105080 -GAGGAGTTTGAGGAGCTCTACACCAGATACGAGAAGGAGGGGAGGGTCAA-GCGTGTGG 105137 Query 75862 ACCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCAT 75920 || | | | | | ||| | || || | | |||||||| || ||||| || || | Sbjct 105138 TGAAGGCTCAGCAGCTGTGGTACGCCATCATTGAGTCACAGACAGAAACTGGGACGCCGT 105197 Query 75921 ATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCA 75980 | ||||| ||||| || || || |||| |||||| ||||| ||||| |||| || |||| Sbjct 105198 ACATGCTGTACAAAGAYGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGGACCATCA 105257 Query 75981 AGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTT 76040 || || || || ||||| ||||| | || ||||| ||||| ||| |||||| | Sbjct 105258 AGTGCAGCAACCTCTGCACAGAAATCGTCGAATACACCAGCAAGGACGAGGTGGCTGTCT 105317 Query 76041 GCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATT 76100 ||||| |||| || ||||| || | ||| |||| ||| || |||| ||| | Sbjct 105318 GCAATCTGGCCTCCATCGCTCTCAACATGTACGTCACACCTGAG---CGGACTTATGACT 105374 Query 76101 ATGAAAAACT-TCA--TGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATTG 76157 | ||||||| || || | || | ||||| || ||| ||||| | || | Sbjct 105375 TTAAAAAACTGGCATCTGTGACCAAAGTAATTGT---CAGAAACTTAAACAAGATTATCG 105431 Query 76158 ACAGAAATTTTTATCCCGTTGAGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTG 76217 ||| ||| | || || || || || | |||||||||||| ||||| || || | Sbjct 105432 ACATAAACTACTACCCAGTGGAAGAGGCCAAGAGGTCTAATATGCGCCACAGGCCAATAG 105491 Query 76218 GTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAG 76277 | | || || ||||| | || || | ||||| || || || ||||||| Sbjct 105492 GAATTGGAGTCCAAGGATTGGCTGACGCCTTTATCCTGATGCGTTATCCATTTGAAAGCC 105551 Query 76278 ATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGG 76337 ||| || || | | || | |||||||| ||||| || |||| | ||||||| Sbjct 105552 CTGAGGCTCAGCTGCTCAACATCCAAATCTTTGAGACCATTTACTACGCTGCTCTGGAGG 105611 Query 76338 CGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGT 76397 |||||||||| || || | | || || |||| ||||| | || ||||| |||| || Sbjct 105612 CGAGTTGTGAGTTAGCCGCCGAACACGGCCCCTACGAGACGTACGAAGGTTC-CCCG-GT 105669 Query 76398 C-CCAAGGGGTGCTT-CAGTTTGATATGTGGGAAGGTGAAACCAA-GCTCAACTACGACT 76454 | ||||| ||| |||| || |||| ||||| || |||| | | | |||| Sbjct 105670 CAGTAAGGGCATCTTCCAGTACGACATGT-GGAAGAAGACGCCAACGGACCTGTGGGACT 105728 Query 76455 GGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 76514 || | | || ||||| || | | || | | ||||| || || |||| | Sbjct 105729 GGAAGGCGCTGAAGGAGAAGGTCGCCAAACACGGCGTGAGGAACAGCCTGCTGCTGGCTC 105788 Query 76515 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACA 76574 |||||||||| ||||||||||| || ||| |||| || || || | | | || | |||| Sbjct 105789 CAATGCCAACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACA 105848 Query 76575 CAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAACAAGCACC 76634 | | ||||||||| | || || |||| |||||| || |||||| |||| Sbjct 105849 CCAGCAACATCTACACCCGCAGGGTGCTGTCAGGAGAGTTTCAGATCGTCAACCCTCACC 105908 Query 76635 TCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAG 76681 | |||| ||||| | | ||| || || ||| | |||| |||||| Sbjct 105909 TGCTCAAAGACCTGACGGAGAGGGGACTGTGGAGCGAGGACATGAAG 105955 >seq34 Length=1455329 Score = 109 bits (120), Expect = 7e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 75876 TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGG 75935 ||||| | |||| | |||| ||||| || ||||| || ||||||||||||||||||| Sbjct 919753 TTTGGTACACTATCATTGAATCGCAGACAGAAACTGGTACGCCATATATGCTTTACAAGG 919694 Query 75936 ATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTT 75995 |||| || |||| |||||| || || | ||| |||| || ||||| | ||||| | Sbjct 919693 ATGCCTGCAACAGGAAGAGCAATCAGCAAAATCTGGGCACCATCAAATCCAGCAATCTAT 919634 Query 75996 GCACGGAAATTTTAGAGTACACAGATAAGGATGAG 76030 |||| ||||| |||||||||| || |||||| Sbjct 919633 GCACAGAAATCGTAGAGTACACGAGCAAAGATGAG 919599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596520107094560