Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq377 149 8e-30 seq1696 131 2e-24 seq1487 125 9e-23 seq1441 104 3e-16 seq1568 91.5 2e-12 seq1698 86.0 8e-11 seq1432 86.0 8e-11 >seq377 Length=355286 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | ||||| ||||||||||||||||| | | | || Sbjct 209106 GCTTGGCCAGCTCCCCGGGAAGCAGGAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGA 209047 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| || || ||| |||||| | |||| || |||| | Sbjct 209046 TGGTGGAGCGCTTGTTGTAGTGAGCAAGGCGGGAGGCCTCCGAAGCGATACGCTCGAAGA 208987 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| |||||||| |||||||| Sbjct 208986 TGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGATGAGATGCCGGTGTCGGGGT 208927 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 208926 GCACCTGCTTCAGCACCTTGTA 208905 Score = 149 bits (164), Expect = 8e-30 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| | | | ||||| ||||||||||||||||| | | | || Sbjct 227461 GCTTGGCCAGCTCCCCGGGAAGCAGGAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGA 227402 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||| || || ||| |||||| | |||| || |||| | Sbjct 227401 TGGTGGAGCGCTTGTTGTAGTGAGCAAGGCGGGAGGCCTCCGAAGCGATACGCTCGAAGA 227342 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| |||||||| |||||||| Sbjct 227341 TGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGATGAGATGCCGGTGTCGGGGT 227282 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 227281 GCACCTGCTTCAGCACCTTGTA 227260 >seq1696 Length=952724 Score = 131 bits (144), Expect = 2e-24 Identities = 150/202 (74%), Gaps = 8/202 (4%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||||||||| || || |||| ||| |||| | |||||||| ||||| || ||||| Sbjct 104851 CTGGTCGACGTAACGTGCAGTGTTGTTGTAGACCCTCAGCATGGGGACGAGCCCATTGGA 104792 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGC----GCACCTTGTGCGCGGCAA 1630180 |||||||||||| || | |||| || | | | ||| || | || | Sbjct 104791 GCAGCCGTTGGTGCCAGCGATGTAGCTCCCTGTTGATCTGATGCAGCTGA----CCGCTA 104736 Query 1630181 AGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGC 1630240 ||||| ||||||||||| ||||||||||| ||||| || || || ||||||||||||| Sbjct 104735 CRCCGATTCCGCCGGCCGATTTGGAGATGAGGGCGCATTGCTTCAGTGTGTCGTAGATGC 104676 Query 1630241 CCTCGATCGAGTCGGCCTTCAT 1630262 ||||||| |||| ||||||| Sbjct 104675 CCTCGATGCTGTCGTCCTTCAT 104654 Score = 113 bits (124), Expect = 6e-19 Identities = 159/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 1627295 TCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 1627354 ||||||| || | | || ||||| |||| |||||| ||||||| | ||| || | Sbjct 105941 TCCACAGTCCCCTCTCCGTCAGGTCTTTGAGCAGGTGAGGGTTGACGATCTGAAACTCTC 105882 Query 1627355 CCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGTTGC 1627414 | || ||||| | ||| |||||||||||| ||||| | ||||| | |||| |||||| Sbjct 105881 CTGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGC 105822 Query 1627415 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCAGGC 1627474 |||||||||| | || | |||||| ||||| | |||| || || ||| | || || Sbjct 105821 CCAGGATCTGGGCGGTGGAGGCCGTTGGCATTGGAGCCAGCAGCAGGCTGTTCCTCACGC 105762 Query 1627475 CGTG-CTGTCGAACTAGCGCGCGCAGCGCGTCCCAGTCCCA 1627514 |||| || ||| || | | |||||| | ||||||||| Sbjct 105761 CGTGTTTGGCGACCT-TCTCCTTCAGCGCCTTCCAGTCCCA 105722 Score = 96.9 bits (106), Expect = 4e-14 Identities = 266/417 (64%), Gaps = 0/417 (0%) Strand=Plus/Minus Query 1628166 GACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGT 1628225 |||||| || ||||| |||||| || | | || ||||| |||||||||||| | | Sbjct 105286 GACGATTTCTGTGCAGAGGTTGCTGCACTTGATGGTCCCCAGATTCTGCTGGTTGCTCTT 105227 Query 1628226 CAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGAC 1628285 | |||| ||| || |||| |||||||| |||| || || || |||| | | | | Sbjct 105226 CCTGTTGCAGGCRTCTTTGTACAGCATGTACGGCGTCCCAGTTTCTGTCTGTGACTCAAT 105167 Query 1628286 GATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNNNNNNNN 1628345 |||||| |||| | ||| | || ||| ||| | | | |||| Sbjct 105166 GATGGCGTACCACAGCTGCTGAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCGTA 105107 Query 1628346 NNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCCTCGGA 1628405 ||||| || | || ||||||||| ||| ||||| |||| Sbjct 105106 TCTGGTGTAGAGCTCCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCAGTCGGC 105047 Query 1628406 CGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGT 1628465 |||||| | || |||||||| || || || | | ||| ||||||||| | Sbjct 105046 CGGACACATCAGGGACCAGTCTTCATTATTCTCCACCCTCTTCATGAAGAGGTCAGGGAT 104987 Query 1628466 CCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAG 1628525 |||||| ||||| || ||||| | ||| || | ||| ||||| || |||||| || || Sbjct 104986 CCACAGGGCGTAGAAAAGGTCCCTCGCTCGCTGCTCTTCCTTTCCCGTGTTCTTCTTCAG 104927 Query 1628526 GTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCC 1628582 || || |||| | | || ||||| ||||||||||| ||| ||||| || Sbjct 104926 CTCCAGGAAGTCAAACACATCAAAATGCCAGGGCTCCAGGTACATGGCGAAGGCTCC 104870 >seq1487 Length=42182 Score = 125 bits (138), Expect = 9e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || ||| ||| | || | ||||||||||||||||| | | || || Sbjct 33051 GCTTGGCCACCTCACCGGGCAGCAGGAGCCTGACGGCGGTCTGGATCTCCCTGGAGCTGA 33110 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| || | ||||| ||| |||||| | | || || |||| | Sbjct 33111 TGGTGGAGCGCTTGTTGTAGCGAGCCAGGCGGGAGGCCTCACCGGCAATCCGCTCGAAGA 33170 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || ||||| |||||||||| ||| | |||| ||||||||| | | ||||| Sbjct 33171 TGTCATTCACAAAGGAGTTCATGATGCTCATGGCCTTGGAGGAGATGCCGATGCTGGGGT 33230 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||||||||| Sbjct 33231 GGACCTGCTTCAGCACCTTGTA 33252 Score = 104 bits (114), Expect = 3e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | || | ||||||||||||||||| | | || || Sbjct 30846 GCTTGGCCAGCTCTCCGGGCAGCAGGAGCCTGACGGCGGTCTGGATCTCCCTGGAGCTGA 30905 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 ||| ||||||||| || | || || ||| |||||| |||| || | | Sbjct 30906 CGGTGGAGCGCTTGTTGTAGAGAGCMAGGCGGGAGGCCTCACCAGCGATCCGCCCAAAGG 30965 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | || || || || |||||||||| ||| | | || ||||||||| | ||| |||| Sbjct 30966 TATCATTCACGAAGGAGTTCATGATGCTCATGGCCCTGGAGGAGATGCCGATGTCAGGGT 31025 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 31026 GGACCTGCTTCAGCACCTTGTAGA 31049 >seq1441 Length=211704 Score = 104 bits (114), Expect = 3e-16 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 1254448 CGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGA 1254507 ||||||| |||| ||||||||||| ||||||||||||| ||| | |||| |||| Sbjct 3146 CGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCATGATGCTCATGGCCTTGGAAGAGA 3205 Query 1254508 TGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTA 1254544 ||||| |||||||||||||||||| ||||||||||| Sbjct 3206 TGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTA 3242 >seq1568 Length=964102 Score = 91.5 bits (100), Expect = 2e-12 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 ||||||||||| | |||||||| ||| | ||| | |||||| | ||||||||| Sbjct 723348 GCCGCCAACTATTTGGACATCAAAGGCCTGTTAGATGTCACCTGCAAGACGGTGGCCAAC 723407 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 |||||||| ||||| | || ||||||||| | ||||| ||||||||||| Sbjct 723408 ATGATCAAAGGCAAAACCCCAGAGGAGATCAGGAAGACTTTTAACATCAA 723457 >seq1698 Length=2458952 Score = 86.0 bits (94), Expect = 8e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 869829 CCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCT 869888 |||||||||| | ||||||| ||||||| |||| ||||||||||| ||| | | | Sbjct 824792 CCACCTCCTCCACCGTCCAGAAAGAGGCCTGAGCCTGTTTGTACATCTTCCAGATGTCCG 824733 Query 869889 GGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCGCGCAACAGGGGTTC 869943 |||| | || ||||||| |||||| || ||||||| || || | ||| ||||| Sbjct 824732 GGTACTGAATGGGGAAGATGACAAACCGCCTGGGGTTCTCTCGGAGCAGAGGTTC 824678 >seq1432 Length=1803605 Score = 86.0 bits (94), Expect = 8e-11 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 512050 CGTCATCTCCTTTGACGGCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACAC 512109 ||||||||||||||| || ||||||||||| |||||||||| || ||| | ||||| Sbjct 1001350 CGTCATCTCCTTTGATGGTTCCTACGTCAACTACCGCCACTTGGCTCTGCTCTGTGACAC 1001291 Query 512110 CATGTGCTGCCGCGGATCGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGC 512161 |||| | |||| || || ||||| |||| || |||||| | |||||| Sbjct 1001290 CATGACCAGCCGAGGTCACCTGATGGCCATCACTCGTCACGGCATTAACCGC 1001239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106594536698929