Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq1696 233 2e-56 seq33 131 2e-25 seq1605 107 2e-18 seq34 86.0 6e-12 >seq1696 Length=952724 Score = 233 bits (258), Expect = 2e-56 Identities = 974/1523 (64%), Gaps = 43/1523 (3%) Strand=Plus/Minus Query 138501 GTTTATGACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGG 138560 ||| | || |||||| || || | || || | || ||| |||||| ||||| | | Sbjct 105901 GTTGACGATCTGAAACTCTCCTGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGC 105842 Query 138561 CTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCAC 138620 ||| | || |||||||| ||||| ||||| || |||| || || ||||| |||| Sbjct 105841 CTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTTGGCATTGGAGCCAG 105782 Query 138621 CAAAAGAGAATTCCGTAAACCGTGAAGCTTGA--TTCGTTCCTTGAGCGACGACCAGTCC 138678 || || |||| | ||||| || ||| ||||| |||| | ||||||| Sbjct 105781 CAGCAGGCTGTTCCTCACGCCGTGTTTGGCGACCTTC--TCCTTCAGCGCCTTCCAGTCC 105724 Query 138679 CACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGA 138738 |||| || | || | || |||||||| |||||||| || || ||| ||| | || Sbjct 105723 CACAGGTCCGTTGGCGTCTTCTTCCACATGTCGTACTGGAAGATGCCCTTACTGACCGGG 105664 Query 138739 CTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGC 138798 |||||||||| ||||| || || || ||||| |||||||| || Sbjct 105663 GAACCTTCGTACGTCTCGTAGGGGCCGTGTTCGGCGGCTAACTCACAACTCGCCTCCAGA 105604 Query 138799 GCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCG 138858 ||| | |||||||| || || || || ||||||| | ||||| | ||| || Sbjct 105603 GCAGCGTAGTAAATGGTCTCAAAGATTTGGATGTTGAGCAGCTGAGCCTCAGGGCTTTCA 105544 Query 138859 TACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGG 138918 | || || | || | || ||||| |||| ||||| || || | ||| | || Sbjct 105543 AATGGATAACGCATCAGGATAAAGGCGTCAGCCAATCCTTGGACTCCAATTCCTATTGGC 105484 Query 138919 CGATGGCGCAGATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATT 138978 | ||||||| ||| ||| || || |||| | || || ||||||| ||||| || Sbjct 105483 CTGTGGCGCATATTAGACCTCTTGGCCTCTTCCACTGGGTAGTAGTTTATGTCGATAATC 105424 Query 138979 TTGTTTAAATTTCGCACGACCACCTTAGTCGTA--TGCTTTAATCGTTCAAAATCGTATG 139036 |||||||| |||| || | || || ||| | ||| | | || ||| || || | Sbjct 105423 TTGTTTAAGTTTCTGACAATTACTTTGGTCACAGATGCC--AGTTTTTTAAAGTCATAAG 105366 Query 139037 TGCCCCC-GTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTG 139095 | | | | | ||| ||||| ||| |||||| | || ||||| | ||| Sbjct 105365 TCCGCTCAGGTGT-------GACGT--ACA----TGTTGAGAGCGATGGAGGCCAGATTG 105319 Query 139096 CACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACAC 139155 || || ||||| ||||| | | |||||||||| ||||| | || | || || ||| Sbjct 105318 CAGACAGCCACCTCGTCCTTGCTGGTGTATTCGACGATTTCTGTGCAGAGGTTGCTGCAC 105259 Query 139156 TTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATA 139215 ||||| || || | ||| || || ||||| || | ||| || || |||||||| ||||| Sbjct 105258 TTGATGGTCCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCRTCTTTGTACAGCATG 105199 Query 139216 TACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGT 139275 ||||| || |||||||| |||| ||| || ||| | ||| | | ||| | Sbjct 105198 TACGGCGTCCCAGTTTCTGTCTGTGACTCAATGATGGCGTACCACAGCTGCTGAGCCTTC 105139 Query 139276 ATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTC 139334 | |||| | | || |||||| | |||||| || || || || | | Sbjct 105138 ACCACACGCTTGACCCTCCCCTCCTTCTCGTATCTGGTGTAGAGCTCCTCAAACTCCTCC 105079 Query 139335 ACC--GTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCG 139392 || | | |||| || || | || | | | |||||||| || ||||| | | Sbjct 105078 CCCCAGCACTCGTC---CAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCA 105022 Query 139393 TTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGC 139452 || || || | | ||||||| || || || ||||||| ||| | | | || | | Sbjct 105021 TTATTCTCCACCCTCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAAAAGGTCCCTC 104962 Query 139453 GCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCG 139512 || || |||||| ||| |||| |||| | ||||| ||||| || ||| Sbjct 104961 GCTCGCTGCTCTTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAA 104902 Query 139513 TGCCATGGTTCCAGATAGATGGCCATTGCGCC---TTTCCGTTTGCCACCTTGATCGACG 139569 ||||| || ||||| || ||||| | || || | | ||||| || || |||||| Sbjct 104901 TGCCAGGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCCCCCTGGTCGACG 104842 Query 139570 TGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTG 139629 | ||| ||| || ||| | || | || ||| || | || || | | |||||| Sbjct 104841 TAACGTGCAGTGTTGTTGTAGACCCTCAGCATGGGGACGAGCCCATTGGAGCAGCCGTTG 104782 Query 139630 GTGCTACGGATG----GGACTGTTGCGAGCTCGGACGTCATGT-ACATTGATGCCGATTC 139684 |||| | |||| ||||| | || || | || | || | ||||||| Sbjct 104781 GTGCCAGCGATGTAGCTCCCTGTT----GATCTGATG-CAGCTGACCGCTACRCCGATTC 104727 Query 139685 CGCCGCCAAATTTGGATATTAAAACGCAATCGCGT-AATGTCTCGTATATACCTCTTATG 139743 ||||| | ||||||| || | ||| || || | | ||| ||||| || || ||| Sbjct 104726 CGCCGGCCGATTTGGAGATGAGGGCGC-ATTGCTTCAGTGTGTCGTAGATGCCCTCGATG 104668 Query 139744 CTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCT 139803 |||||||||| ||| | | ||| ||||| || || || || || || || || Sbjct 104667 CTGTCGTCCTTCATTGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTGGTTCCAGCA 104608 Query 139804 GCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCG 139863 || || || ||| ||||| |||||| | | ||||| || | ||| || ||| Sbjct 104607 TTGAAGAGGGTTGGAGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCG 104548 Query 139864 ATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGG 139923 ||||| | |||||| | |||||||| || || | |||| ||| ||||| ||||| Sbjct 104547 ATGGCTGCGTCGATATCCGTCCCGTGGATTCCCACGGCCACTCTCATGAGCATGTGTTGC 104488 Query 139924 ATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTCTAGGGTCTTGTAG 139983 ||| || |||||| || || || || ||| || | ||| || |||||| || Sbjct 104487 GGCCGCTCAGCCACCTTGCTGTCAATCTTCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAG 104428 Query 139984 CCAAAGTACCTATAGTTGAAATC 140006 || ||| | | ||| |||||| Sbjct 104427 CCGAAGAAGTTGTAGGAGAAATC 104405 >seq33 Length=2144867 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || || || || || ||| | Sbjct 1190512 ATGCAGATCTTTGTGAAAACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 1190571 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| ||||| || ||||| ||||||||||| || |||||||| || Sbjct 1190572 GACACAATTGAAAATGTAAAGGCCAAAATCCAGGACAAAGAAGGCATTCCTCCCGACCAG 1190631 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | |||| || || ||| Sbjct 1190632 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 1190691 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||| | || |||| Sbjct 1190692 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCG 1190726 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||||||| | || || || || || || || || || || || || || ||| Sbjct 1190283 GATGCAGATCTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 1190342 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||||| | |||| ||||| || ||||| ||||| || || || || || || || Sbjct 1190343 CGACACAATTGAAAATGTAAAGGCCAAAATCCAGGACAAGGAGGGCATTCCCCCTGACCA 1190402 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||||||||| || |||||||| ||| | | | |||| || || || Sbjct 1190403 GCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAA 1190462 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 ||| || ||||| || || || ||| |||| |||| Sbjct 1190463 CATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCG 1190498 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | ||||| || || || || || || || || || || || ||| Sbjct 1190740 ATGCAGATCTTYGTGAAAACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 1190799 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || ||| |||||||| || || || || || || ||||| || Sbjct 1190800 GACACCATTGAGAACGTGAAAGCTAAGATCCAGGATAAGGAGGGCATTCCCCCCGACCAG 1190859 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||| || || || |||||||| ||| | | | |||| || || ||| Sbjct 1190860 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTGTCTGACTACAAC 1190919 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||| |||| |||| Sbjct 1190920 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCG 1190954 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | || || || || || || || || || || || || || ||| Sbjct 1213252 GATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAG 1213311 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| | || | || || || ||||| ||||||||||| || || || || || Sbjct 1213312 CGACACCATTGAGAATGTGAAGGCCAAAATCCAGGACAAAGAAGGGATTCCCCCTGACCA 1213371 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | ||||||| || || || |||||||| ||| | | |||| || || || Sbjct 1213372 GCAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTGTCTGACTACAA 1213431 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGT 24912 ||| || ||||| || || || ||| |||| Sbjct 1213432 CATCCAGAAGGAGTCCACCCTCCACCTGGT 1213461 >seq1605 Length=404251 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || || || || ||||| || ||| Sbjct 108434 ATGCAGATCTTTGTCAAGACCCTGACGGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 108375 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| |||||||| || || ||||| || || Sbjct 108374 GACACCATTGAGAATGTGAAGGCTAAGATCCAGGACAAAGAGGGCATCCCTCCTGACCAG 108315 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | | ||||| || || || |||||||| ||| | | | |||| || || ||| Sbjct 108314 CAGAGGCTCATCTTCGCAGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCCGACTACAAC 108255 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| ||||| |||| | || ||||| Sbjct 108254 ATCCAGAAGGAGTCCACCCTCCACCTGGTGCTGCGCCTCCGTGGAGG 108208 >seq34 Length=1455329 Score = 86.0 bits (94), Expect = 6e-12 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 139121 TGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGAT 139180 |||| || || ||||| | || | ||| || | ||||| || || | |||||| |||| Sbjct 919613 TGTACTCTACGATTTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGAT 919672 Query 139181 TGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTC 139232 |||| || | ||| || ||||| |||||||||||||| || || |||||||| Sbjct 919673 TGCTCTTCCTGTTGCAGGCATCCTTGTAAAGCATATATGGCGTACCAGTTTC 919724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449860275370360