Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq377 201 2e-45 seq1487 192 9e-43 seq1696 116 6e-20 seq1801 109 9e-18 seq1441 109 9e-18 seq148 105 1e-16 >seq377 Length=355286 Score = 201 bits (222), Expect = 2e-45 Identities = 191/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||||||||| ||||| || ||||||||| ||||||| || ||| | | Sbjct 209145 TGTATTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGAA 209086 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| ||||||||||||||||| | || | ||| ||| ||||||||| | Sbjct 209085 GCAGGAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 209026 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| |||||| | |||| || |||| ||||||||||| |||||||||| Sbjct 209025 GAGCAAGGCGGGAGGCCTCCGAAGCGATACGCTCGAAGATGTCGTTGACGAACGAGTTCA 208966 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| |||||||||||||||||| |||||||||| Sbjct 208965 TGATGCTCATGGCCTTGGATGAGATGCCGGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 208906 Query 1485710 AAAC 1485713 | || Sbjct 208905 ACAC 208902 Score = 201 bits (222), Expect = 2e-45 Identities = 191/244 (78%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||| ||||||||||||||||| ||||| || ||||||||| ||||||| || ||| | | Sbjct 227500 TGTATTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCCCCGGGAA 227441 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| ||||||||||||||||| | || | ||| ||| ||||||||| | Sbjct 227440 GCAGGAGGCGGACGGCGGTCTGGATCTCCCTGGAGGTGATGGTGGAGCGCTTGTTGTAGT 227381 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| |||||| | |||| || |||| ||||||||||| |||||||||| Sbjct 227380 GAGCAAGGCGGGAGGCCTCCGAAGCGATACGCTCGAAGATGTCGTTGACGAACGAGTTCA 227321 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| |||||||| |||||||||||||||||| |||||||||| Sbjct 227320 TGATGCTCATGGCCTTGGATGAGATGCCGGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 227261 Query 1485710 AAAC 1485713 | || Sbjct 227260 ACAC 227257 >seq1487 Length=42182 Score = 192 bits (212), Expect = 9e-43 Identities = 189/244 (77%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| |||||| || ||| ||| Sbjct 33012 TGTACTTGGTGACGGCCTTGGTTCCCTCGGACACGGCGTGCTTGGCCACCTCACCGGGCA 33071 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | ||||||||||||||||| | || || ||| ||| ||||||||| || Sbjct 33072 GCAGGAGCCTGACGGCGGTCTGGATCTCCCTGGAGCTGATGGTGGAGCGCTTGTTGTAGC 33131 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | ||||||||| |||||| | | || || |||| ||||| || ||||| ||||||| Sbjct 33132 GAGCCAGGCGGGAGGCCTCACCGGCAATCCGCTCGAAGATGTCATTCACAAAGGAGTTCA 33191 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||||| | | |||||| |||||||| |||||||||| Sbjct 33192 TGATGCTCATGGCCTTGGAGGAGATGCCGATGCTGGGGTGGACCTGCTTCAGCACCTTGT 33251 Query 1485710 AAAC 1485713 | || Sbjct 33252 ACAC 33255 Score = 154 bits (170), Expect = 2e-31 Identities = 180/244 (74%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||| ||||||||||| ||||| || ||||| ||| ||||||| || ||| ||| Sbjct 30807 TGTACTTGGTCACGGCCTTGGTGCCCTCAGACACGGCATGCTTGGCCAGCTCTCCGGGCA 30866 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | ||||||||||||||||| | || || || ||| ||||||||| | Sbjct 30867 GCAGGAGCCTGACGGCGGTCTGGATCTCCCTGGAGCTGACGGTGGAGCGCTTGTTGTAGA 30926 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || |||||| |||||| |||| || | | | || || || || ||||||| Sbjct 30927 GAGCMAGGCGGGAGGCCTCACCAGCGATCCGCCCAAAGGTATCATTCACGAAGGAGTTCA 30986 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | || ||||||||| | ||| ||||| |||||||| |||||||||| Sbjct 30987 TGATGCTCATGGCCCTGGAGGAGATGCCGATGTCAGGGTGGACCTGCTTCAGCACCTTGT 31046 Query 1485710 AAAC 1485713 | || Sbjct 31047 AGAC 31050 >seq1696 Length=952724 Score = 116 bits (128), Expect = 6e-20 Identities = 156/217 (72%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 2073540 CTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGA 2073599 ||||||||| || || || |||| ||| |||| | |||||||| || || || ||||| Sbjct 104851 CTGGTCGACGTAACGTGCAGTGTTGTTGTAGACCCTCAGCATGGGGACGAGCCCATTGGA 104792 Query 2073600 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGC----GCACCTTGTGCGCGGCAA 2073655 |||||||||||| || | |||| || | | | ||| || | || | Sbjct 104791 GCAGCCGTTGGTGCCAGCGATGTAGCTCCCTGTTGATCTGATGCAGCTGA----CCGCTA 104736 Query 2073656 AGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGC 2073715 ||||| |||||||||| ||||||||||| ||||| | ||||| || |||||||||| Sbjct 104735 CRCCGATTCCGCCGGCCGATTTGGAGATGAGGGCGCATTGCTTCAGTGTGTCGTAGATGC 104676 Query 2073716 CCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCA 2073752 ||||||| |||| ||||||| | | ||| ||||| Sbjct 104675 CCTCGATGCTGTCGTCCTTCATTGCAAGCAGGAAGCA 104639 Score = 104 bits (114), Expect = 4e-16 Identities = 157/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 2069564 TCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTTGACCACGGTAAAGTCGC 2069623 ||||||| || | | || ||| | | || |||||| ||||||| | ||| || | Sbjct 105941 TCCACAGTCCCCTCTCCGTCAGGTCTTTGAGCAGGTGAGGGTTGACGATCTGAAACTCTC 105882 Query 2069624 CCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCACGCCTCGGTGTTGC 2069683 | || ||||| | ||| |||||||||||||| ||| | ||||| | |||| |||||| Sbjct 105881 CTGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGC 105822 Query 2069684 CCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGTTGCGCAGGC 2069743 |||||||||| | || | |||||| ||||| | |||| ||||| ||| | || || Sbjct 105821 CCAGGATCTGGGCGGTGGAGGCCGTTGGCATTGGAGCCAGCAGCAGGCTGTTCCTCACGC 105762 Query 2069744 CGT-ACTGTCGCACCAGCGCCCGCAGGGCGTCCCAGTCCCA 2069783 ||| || || ||| | || ||| || | ||||||||| Sbjct 105761 CGTGTTTGGCG-ACCTTCTCCTTCAGCGCCTTCCAGTCCCA 105722 >seq1801 Length=82634 Score = 109 bits (120), Expect = 9e-18 Identities = 77/88 (88%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 |||||||||||||||||||||| ||||| || ||||||||| ||||||| || ||| ||| Sbjct 35173 TGTACTTGGTGACGGCCTTGGTGCCCTCGGACACGGCGTGCTTGGCCAGCTCACCGGGCA 35232 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTC 1485557 | ||||||||||||||||||||||| Sbjct 35233 GCAGGAGGCGCACGGCGGTCTGGATCTC 35260 >seq1441 Length=211704 Score = 109 bits (120), Expect = 9e-18 Identities = 96/120 (80%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 1485594 CAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGAT 1485653 ||||||| ||||| | ||||||| |||| ||||||||||| |||||||||||||| Sbjct 3126 CAGGCGGGACGCCTCACCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCATGAT 3185 Query 1485654 CGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGTAAAC 1485713 ||| | ||| ||||||||| |||||||||||||||||| ||||||||||| || Sbjct 3186 GCTCATGGCCTTGGAAGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGTACAC 3245 >seq148 Length=2080117 Score = 105 bits (116), Expect = 1e-16 Identities = 161/227 (71%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| |||||||||||||| ||||| || |||||||| | ||||| || ||| ||| Sbjct 988351 TGTACTTTGTGACGGCCTTGGTTCCCTCAGACACGGCGTGTTTAGCCAGCTCCCCGGGCA 988410 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| | ||| || || || | || | | | ||| ||| ||||||||| || | Sbjct 988411 GCAGCAGCCTCACCGCAGTTTGCACTTCTCTGCTAGTGATGGTGGAGCGCTTGTT-GTAC 988469 Query 1485590 -GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTC 1485648 | ||||| ||| || || ||| | || | || | || ||| || || || |||||| Sbjct 988470 TGAGCCAGCCGGGACGCTTCTGTGGCAATCCTCTCAAACAGGTCATTCACGAAGGAGTTC 988529 Query 1485649 ATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1485695 ||||| ||| | | || | || |||||| ||| || || ||||| Sbjct 988530 ATGATGCTCATGGCTCTGCTCGAAATGCCCGTGTCCGGATGAACCTG 988576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915540392038643