Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1027 313 2e-79 seq1454 95.1 9e-14 seq1166 93.3 3e-13 seq1766 89.7 4e-12 seq90 87.8 1e-11 >seq1027 Length=1617720 Score = 313 bits (346), Expect = 2e-79 Identities = 965/1477 (65%), Gaps = 18/1477 (1%) Strand=Plus/Plus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| || |||| | ||||| ||||| || |||||||| | || || || ||||| || Sbjct 1389974 TTTGTCGACGGCGGATACATTTAGAATGCCGTTGGCATCGATGTCGAAAGTTACTTCTAT 1390033 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 || || || || | ||||||| ||||| ||| | | ||| | |||||| || Sbjct 1390034 CTGTGGAACACCCCGGGGAGCAGGAGGGATACCTGTGAGGTCAAACTTGCCCAGAAGGTT 1390093 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGAT-AGTAACTACAGTTTGAT 281594 || ||||| || | || || || || | | || || |||| | | | || | Sbjct 1390094 GTTGTCTTTGGTCATGGCTCTCTCGCCTTCATATACCTGAATCAGTA-CACCTGGCTGGT 1390152 Query 281595 TATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCA 281653 ||||||| || || | || | |||| | | || || ||||| ||||||| | | Sbjct 1390153 TATCTGAGTATGTGGAGAAGA-TCTGAGTCTGCTTGGTGGGGATTGTGGTGTTTCGCTTA 1390211 Query 281654 ATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCA 281713 || | | ||||||| ||| || || ||||| | ||| ||||| || |||| ||||| Sbjct 1390212 ATCAGAGGTGTCATAACACCGCCTGCGGTTTCAATACCCAGAGACAGGGGAGCCACATCC 1390271 Query 281714 ACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATA 281773 | || | | || ||| | || || ||| | || | || || || ||||| | Sbjct 1390272 AGCAGCAGCAAATCTTGGACATTCTCTGAAGTGTCGCCCATGAGGATGGCAGCTTGTACT 1390331 Query 281774 GCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTG 281833 || |||||||| || ||||||||||| || || | | | || || | ||| ||||| Sbjct 1390332 GCTGCACCATAGGCCACAGCTTCATCTGGGTTGATGCTCTTGTTCAGGTCTTTGCCATTA 1390391 Query 281834 AAAAAATT-TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATAC 281892 ||||| | || |||| || | || ||||| | | || || ||||| | || Sbjct 1390392 AAAAAGTCCTGTAAGAGCTTCTGGATTCTG-GGAATTCTTGTAGAGCCACCAACCAGCAC 1390450 Query 281893 AATTTCATGCA-CCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTT 281951 ||||||||| | |||| ||||||||||| || | |||| || |||| ||||| || | Sbjct 1390451 AATTTCATGAATCCTG-GATTTATCCAGCTTGGCATCCTGCAAGGCTTTCTCAACTGGAT 1390509 Query 281952 CAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGA 282011 | || | || || | |||||| || || || || || || || | | | Sbjct 1390510 CCAGTGTTCCCCTGAAAAGATCTGAATTGAGCTCCTCAAAACGCGCCCTTGTGATTGAGG 1390569 Query 282012 CATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAG 282071 | | |||||||||| || || | ||| |||| ||||| | | ||||| || | Sbjct 1390570 TGTAAAAATCAATTCCCTCAAAGAGAGAGTCAATCTCAATGCTTGCCTGAGTGCTGGAGG 1390629 Query 282072 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT 282131 | | | | || || | ||||| ||||| | ||||| | | ||| | || ||| Sbjct 1390630 ACAAGGTCCTCTTTGCTCTCTCACAAGCTGTACGCAGTCTCCTCACTGCTCT--CTTATT 1390687 Query 282132 --GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACG 282189 | | | || | || | |||||| || || ||||| ||| | | || | || Sbjct 1390688 CTGGCTGATGTCCTTCTTGTGTTTTCTTTTAAATTCTTCTACAAAGTGGTTGACCATTCG 1390747 Query 282190 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 282249 || ||||| || || || || | | || | |||||| || | | |||| | || | Sbjct 1390748 GTTGTCAAAGTCCTCCCCACCAAGGTGTGTGTCTCCTGAAGTGGATTTTACCTCAAAGAT 1390807 Query 282250 TCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAG 282309 ||||| |||| | ||| | | || ||| ||| || ||||| | |||||| || || Sbjct 1390808 GCCATCCTCAATGGTCAAGATTGACACGTCAAAGGTGCCTCCACCAAGATCAAAGATCAG 1390867 Query 282310 TACATTCATTTCTTTGTCTTGGTT---TTTATCAAGACCATACGCAAAAGCAGCAGCAGT 282366 || ||| |||| |||| || |||||| || || || |||| || || || || Sbjct 1390868 TATATTGCGTTCTCC-TCTT--TTACCTTTATCCAGGCCGTAGGCAATGGCTGCTGCTGT 1390924 Query 282367 TGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGC 282426 || ||||| || || |||| |||||| || |||| || || ||||| || ||||| Sbjct 1390925 GGGCTCATTGATGATCCTCAGAACATTTAGTCCAGAGATCACCCCAGCATCCTTGGTGGC 1390984 Query 282427 TTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTT 282486 |||||| ||||| || || ||||| || || || || || || |||| || || | Sbjct 1390985 TTGTCTCTGTGAGTCATTGAAATAMGCTGGCACTGTGATGACTGCATTTGACACCCTCTG 1391044 Query 282487 TCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTC 282546 ||| | ||| || ||| | | ||||||||| | | ||| || ||||||| || Sbjct 1391045 TCCCAGATAGGCCTCAGCTATCTCCTTCATTTTAACCAGGACCATGGAAGAAATTTCCTC 1391104 Query 282547 TGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAAC 282606 ||| | | ||||| || || || || | | | || || | | | Sbjct 1391105 AGGATAGAACGCCTTGGTCTCCCCTTTGTACTCCACCTGGACTTTGGGCTTTCCATTATC 1391164 Query 282607 ATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATC 282666 | | || || || || ||||| |||||| || || || ||| || |||||||||| | Sbjct 1391165 ACTGATCACCTTGAAAGGCCAGAGTTTCATGTCAGACTGGACAATTGGGTCATTAAACTT 1391224 Query 282667 TCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATA 282726 ||| ||||| | ||||| |||||||| || || ||| | || || | |||| |||| | Sbjct 1391225 TCTTCCAATCAGCCGTTTGGCATCAAAGATTGTGTTGTTGGGGTTCATTGCAACTTGGTT 1391284 Query 282727 TTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGT 282786 ||||| ||||||||||| || |||||| || ||||| | || || ||||| || Sbjct 1391285 CTTGGCAGCATCTCCAATGAGCCTTTCTGTGTCAGTAAAGGCCACGTAGCTGGGAGTGGT 1391344 Query 282787 GCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACA 282846 | ||| || ||||| || ||||| || || ||||| |||| || | || || ||||| Sbjct 1391345 CCTATTGCCCTGATCGTTGGCAATGATCTCTACTTTGCCATGCTGGAAAACCCCAACACA 1391404 Query 282847 ACTAAAAGTTGTTCCTAAATCAATACCAATAGCAATT 282883 | | || || || | |||||| ||||| | |||| Sbjct 1391405 TGAATAGGTGGTGCCCAGATCAATGCCAATGGAAATT 1391441 >seq1454 Length=76213 Score = 95.1 bits (104), Expect = 9e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| |||||||||||| ||||||||||| | ||||| || || || || |||||||| Sbjct 35657 GCAGACACATTAAGAATGCCATTGGCATCAATGTCAAAGGTCACCTCGATCTGAGGGACT 35716 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 ||||| |||||||||| || || || | ||| | ||||| ||||||| || ||| Sbjct 35717 CCTCTGGGAGCAGGTGGAATACCAGTTAATTCAAACTTCCCCAGGATATTATTGTCCTTA 35776 Query 281546 GT 281547 || Sbjct 35777 GT 35778 >seq1166 Length=185038 Score = 93.3 bits (102), Expect = 3e-13 Identities = 128/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 282697 AGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGT 282756 ||| ||||| || || | ||| | |||| ||||||||||| |||||||| || || Sbjct 112530 AGTGTTGGTGGGGTTCATGGCAACCTGATTCTTGGCTGCATCGCCAATCAGCCTCTCCGT 112471 Query 282757 CTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTC 282816 ||||| || | ||||| || || || | || || || ||||| ||||||||||| Sbjct 112470 ATCTGTGAAGGCCACATAGCTGGGTGTGGTCCTGTTGCCCTGGTCATTGGCAATAATTTC 112411 Query 282817 AACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACCAA 282875 |||||| |||| || | ||||| ||||| | || || || | ||||||||||| Sbjct 112410 AACTTTGCCATGCTGGAACACACCAACACAGGAGTAGGTGGTCCCAAGATCAATACCAA 112352 >seq1766 Length=1205356 Score = 89.7 bits (98), Expect = 4e-12 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || || || |||| |||||||| || || ||||| || || | | ||| Sbjct 830015 TTTTTGTCCAGGCCGTAGGCAATGGCAGCAGCGGTGGGCTCATTGATGATACGAAGGACA 830074 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| ||| | ||||||||||| ||||| || | || || || || || || Sbjct 830075 TTTAGCCCAGAAATGGTCCCTGCATCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAC 830134 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 ||||| || || | ||||||| |||||| Sbjct 830135 GCAGGCACTGTCACTACGGCATTTGTTAC 830163 >seq90 Length=2335785 Score = 87.8 bits (96), Expect = 1e-11 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 |||||||| || |||| || |||||| ||||||||||| | || ||||| ||||||||| Sbjct 1494138 GGTTCATTGATGATTCGCATAACATTCAGACCAGCAATGGTACCAGCATCCTTAGTGGCT 1494079 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTAC 282480 || | || | ||| || || || ||||| ||||| | || |||| ||| || Sbjct 1494078 TGGCGCTGGGCATCATTGAAGTAGGCAGGGACAGTGACCACAGCATGTGTGAC 1494026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740304551347962