Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq33 134 3e-26 seq1605 118 2e-21 seq1529 95.1 2e-14 seq173 93.3 8e-14 seq1061 89.7 1e-12 >seq33 Length=2144867 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || || | |||||| || | ||| || || || || ||||| || || || |||| Sbjct 1190512 TACCACCCCTGAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 1190453 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || || || |||||||| || || || || || || | Sbjct 1190452 ACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGG 1190393 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || || || || |||||||||||||| || || | || || | Sbjct 1190392 GAATGCCCTCCTTGTCCTGGATTTTGGCCTTTACATTTTCAATTGTGTCGCTGGGCTCAA 1190333 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || |||||||| || | ||||| ||||| |||||||| Sbjct 1190332 CCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 1190284 Score = 131 bits (144), Expect = 3e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || || | |||||| || | ||| || || || || ||||| || || || ||||| Sbjct 1190738 CCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1190679 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || || || |||||||| || || || || || ||||| Sbjct 1190678 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 1190619 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || || || || || || |||||||||||||| || || | || || || Sbjct 1190618 ATGCCTTCTTTGTCCTGGATTTTGGCCTTTACATTTTCAATTGTGTCGCTGGGCTCAACC 1190559 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| || | || || ||||| |||||||| Sbjct 1190558 TCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 1190512 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| | |||||| || | ||| || || || || ||||| || || || ||||| Sbjct 1213860 ACCGCCTCTGAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 1213801 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || || || ||||||||||| || || || || || || || Sbjct 1213800 CAGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGGGG 1213741 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || || |||||||| || ||||| || || ||||| ||||| || ||| | || || || Sbjct 1213740 AATGCCCTCCTTATCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 1213681 Query 82763 TTC 82765 || Sbjct 1213680 CTC 1213678 >seq1605 Length=404251 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| || || || || || ||||| || ||||||||||| || ||||| Sbjct 108729 TTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTA 108788 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| ||||| || ||| | || || || |||| || || |||||||| ||| Sbjct 108789 GCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 108848 Query 82788 AACGTCTTTACAAATATCTGCAT 82810 | ||||| ||||| |||||||| Sbjct 108849 AGGGTCTTGACAAAGATCTGCAT 108871 >seq1529 Length=688786 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 60139 GATAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGT 60198 ||||||| ||| | ||||||||||| | || ||||| | || | ||| ||||| || Sbjct 587367 GATAGCCTCAGCTCTTTGGTGGTACTACGTCTCCAAAGGAGTGGAGTTCTTGGATACAGT 587308 Query 60199 GTTTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTT 60258 ||||||||||| ||||| ||||| ||||| || || || | ||||| || ||||| | Sbjct 587307 CTTTTTCATACTGAGGAAGAAGTTCAATCAAGTCAGCTTCCTCCACGTCTACCATCACTG 587248 Query 60259 TACTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAA 60310 || ||||| | | | ||| | || || |||||| | |||| || ||| Sbjct 587247 CACCATGTTCATCCTCTGGTGGATTGGAATCAAATGGGTCCCCGGTGGACAA 587196 >seq173 Length=537686 Score = 93.3 bits (102), Expect = 8e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 |||||||| || || |||||||| |||||||||||||| || ||| | || || ||||| Sbjct 457463 CCTTCCTTGTCCTGGATCTTTGCCTTTACATTTTCAATAGTGTCACTGGGCTCAACTTCA 457522 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || || || || |||| ||||||||| || |||||||| Sbjct 457523 AGGGTGATGGTTTTCCCCGTCAGCGTCTTTACGAAGATCTGCAT 457566 >seq1061 Length=1507073 Score = 89.7 bits (98), Expect = 1e-12 Identities = 121/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 60141 TAGCCAGAGCATTATGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGT 60200 |||| |||| | |||||||| | ||| || || || || ||||| | || || |||| Sbjct 444961 TAGCGGGAGCTCTGTGGTGGTATTTTATCTCCAAGGGCATTGAATATCTGGACACTGTGT 444902 Query 60201 TTTTCATACTTAGGAAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTA 60260 ||||||| || || ||||| || || ||||||| || | ||||| || || |||| | Sbjct 444901 TTTTCATCCTGAGAAAAAAATTCAACCAGGTTACCTTCCTGCACGTCTACCACCATTGCA 444842 Query 60261 CTATGTTTACTTTAGGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCA 60309 ||||| || | | ||| | ||||| |||||| | || ||||| || Sbjct 444841 GCATGTTCACACTCTGGTGGATTGGCATCAAATGGGTGGCAGGAGGACA 444793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981743708789943