Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq490 113 6e-20 seq143 113 6e-20 seq5784 107 3e-18 seq1787 107 3e-18 seq115 107 3e-18 seq1357 104 3e-17 seq1033 104 3e-17 seq935 91.5 2e-13 seq1612 89.7 7e-13 >seq490 Length=1568546 Score = 113 bits (124), Expect = 6e-20 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 |||||||||||||||||||||||||||| |||| ||||| | |||||||||||||||||| Sbjct 1010878 TATTCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 1010819 Query 8715 TTCCCCGACGAGGAG 8729 |||||||||| |||| Sbjct 1010818 TTCCCCGACGGGGAG 1010804 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 1010875 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1010816 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 1010815 CCCGACGGGGAG 1010804 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| ||||||||| Sbjct 1010804 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1010863 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 1010864 TACTAACGAGGA 1010875 >seq143 Length=2590508 Score = 113 bits (124), Expect = 6e-20 Identities = 70/75 (93%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 8655 TATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 8714 |||||||||||||||||||||||||||| |||| ||||| | |||||||||||||||||| Sbjct 923474 TATTCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 923533 Query 8715 TTCCCCGACGAGGAG 8729 |||||||||| |||| Sbjct 923534 TTCCCCGACGGGGAG 923548 Score = 102 bits (112), Expect = 1e-16 Identities = 72/81 (89%), Gaps = 1/81 (1%) Strand=Plus/Plus Query 11722 TAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGG 11780 |||| | ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||| Sbjct 923469 TAACGTATTCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGG 923528 Query 11781 TTCGATTCCCCGACGAGGAGG 11801 ||||||||||||||| ||||| Sbjct 923529 TTCGATTCCCCGACGGGGAGG 923549 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| ||||||||| Sbjct 923548 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 923489 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 923488 TACTAACGAGGA 923477 >seq5784 Length=1137 Score = 107 bits (118), Expect = 3e-18 Identities = 70/76 (92%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 |||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 1135 CAGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 1076 Query 11786 TTCCCCGACGAGGAGG 11801 |||||||||| ||||| Sbjct 1075 TTCCCCGACGGGGAGG 1060 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 1132 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1073 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 1072 CCCGACGGGGAG 1061 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 1061 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 1120 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 1121 TACTAACGAGGA 1132 >seq1787 Length=100265 Score = 107 bits (118), Expect = 3e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||||| Sbjct 18640 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 18581 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 18580 CCCGACGGGGAG 18569 Score = 105 bits (116), Expect = 9e-18 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 16487 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 16428 Query 8717 CCCCGACGAGGAG 8729 |||||||| |||| Sbjct 16427 CCCCGACGGGGAG 16415 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 14417 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 14358 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 14357 CCCGACGGGGAG 14346 Score = 104 bits (114), Expect = 3e-17 Identities = 68/74 (92%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 11729 GTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 11787 |||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||| Sbjct 18641 GTCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 18582 Query 11788 CCCCGACGAGGAGG 11801 |||||||| ||||| Sbjct 18581 CCCCGACGGGGAGG 18568 Score = 102 bits (112), Expect = 1e-16 Identities = 69/76 (91%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 14420 CACTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 14361 Query 11786 TTCCCCGACGAGGAGG 11801 |||||||||| ||||| Sbjct 14360 TTCCCCGACGGGGAGG 14345 Score = 102 bits (112), Expect = 1e-16 Identities = 67/73 (92%), Gaps = 1/73 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 16486 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 16427 Query 11789 CCCGACGAGGAGG 11801 ||||||| ||||| Sbjct 16426 CCCGACGGGGAGG 16414 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| ||||||||| Sbjct 18569 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 18628 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 18629 TACTAACGAGGA 18640 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 14346 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 14405 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 14406 TACTAACGAGGA 14417 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 16415 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 16474 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 16475 TACTAACGAGGA 16486 >seq115 Length=788868 Score = 107 bits (118), Expect = 3e-18 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||||||||| |||| ||||| | ||||||||||||||||||||| Sbjct 755369 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 755310 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 755309 CCCGACGGGGAG 755298 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 755369 TCCTCGTTAGTATAGTGGTTAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 755310 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 755309 CCCGACGGGGAG 755298 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| ||||||||| Sbjct 755298 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 755357 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 755358 TACTAACGAGGA 755369 >seq1357 Length=1100848 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 1092409 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1092350 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 1092349 CCCGACGGGGAG 1092338 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 1093219 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1093160 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 1093159 CCCGACGGGGAG 1093148 Score = 100 bits (110), Expect = 4e-16 Identities = 68/75 (91%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 1092409 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1092350 Query 11789 CCCGACGAGGAGGGA 11803 ||||||| |||| || Sbjct 1092349 CCCGACGGGGAGTGA 1092335 Score = 100 bits (110), Expect = 4e-16 Identities = 66/72 (92%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 1093219 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 1093160 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 1093159 CCCGACGGGGAG 1093148 Score = 96.9 bits (106), Expect = 5e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411 ||||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||| Sbjct 1092337 ACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1092396 Query 139412 ATACTAACGAGGA 139424 ||||||||||||| Sbjct 1092397 ATACTAACGAGGA 1092409 Score = 96.9 bits (106), Expect = 5e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 139352 ACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACT 139411 ||||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||| Sbjct 1093147 ACTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1093206 Query 139412 ATACTAACGAGGA 139424 ||||||||||||| Sbjct 1093207 ATACTAACGAGGA 1093219 >seq1033 Length=355194 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 92795 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 92736 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 92735 CCCGACGGGGAG 92724 Score = 102 bits (112), Expect = 1e-16 Identities = 69/76 (91%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785 || ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||| Sbjct 92798 CACTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGA 92739 Query 11786 TTCCCCGACGAGGAGG 11801 |||||||||| ||||| Sbjct 92738 TTCCCCGACGGGGAGG 92723 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||||| Sbjct 92724 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 92783 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 92784 TACTAACGAGGA 92795 >seq935 Length=447198 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 8656 ATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGAT 8715 |||||||||||||||||||| ||||| ||| ||||| | ||| |||||| |||||||| Sbjct 5334 ATTCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGRGGTTCGAT 5275 Query 8716 TCCCCGACGAGGAG 8729 ||||||||| |||| Sbjct 5274 TCCCCGACGGGGAG 5261 Score = 84.2 bits (92), Expect = 3e-11 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788 |||||||||||||||||| ||||| ||| ||||| | ||| |||||| |||||||||| Sbjct 5332 TCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGRGGTTCGATTC 5273 Query 11789 CCCGACGAGGAG 11800 ||||||| |||| Sbjct 5272 CCCGACGGGGAG 5261 >seq1612 Length=201813 Score = 89.7 bits (98), Expect = 7e-13 Identities = 72/83 (87%), Gaps = 3/83 (4%) Strand=Plus/Minus Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784 |||||||| |||||||||||||| ||| | ||| ||||| | ||||||||||||||||| Sbjct 134647 CCAGTCCTTGTTAGTATAGTGGTGAGTTTCCCCC-CTGTC-CGCGGGAGACCGGGGTTCG 134590 Query 11785 ATTCCCCGACGAGGAGGGAGGTT 11807 ||||||||||| |||| | |||| Sbjct 134589 ATTCCCCGACGGGGAGAGTGGTT 134567 Score = 87.8 bits (96), Expect = 2e-12 Identities = 64/72 (89%), Gaps = 2/72 (3%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 |||| |||||||||||||| ||| ||||| ||||| | ||||||||||||||||||||| Sbjct 134643 TCCTTGTTAGTATAGTGGTGAGT-TTCCCCCCTGTC-CGCGGGAGACCGGGGTTCGATTC 134586 Query 8718 CCCGACGAGGAG 8729 ||||||| |||| Sbjct 134585 CCCGACGGGGAG 134574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652790638363280