Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq1696 273 2e-68 seq1605 143 3e-29 seq33 127 2e-24 seq34 102 8e-17 seq173 82.4 7e-11 >seq1696 Length=952724 Score = 273 bits (302), Expect = 2e-68 Identities = 987/1526 (65%), Gaps = 36/1526 (2%) Strand=Plus/Minus Query 148237 TCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCA 148296 ||||||| | || ||| | | || || | ||||||||| || | ||||| | || Sbjct 105923 TCAGGTCTTTGAGCAGGTGAGGGTTGACGATCTGAAACTCTCCTGACAGCACCCTGCGGG 105864 Query 148297 GATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCG 148356 || | |||||| || | | || | |||||||||||||||| ||||| ||||| | Sbjct 105863 TGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGG 105804 Query 148357 TTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGC 148416 ||||| ||||| || | |||||| ||| | || ||| | || | || Sbjct 105803 AGGCCGTTGGCATTGGAGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGACCTTCT 105744 Query 148417 GCTTCAGAGCCGCCCAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCA 148476 |||||| ||| ||||||||| || || || ||| ||||||||||||||||| | Sbjct 105743 CCTTCAGCGCCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCTTCCACATGTCGTACTGGA 105684 Query 148477 GAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCA 148536 ||||| || | ||| || ||||||| ||| || ||||| | || || | Sbjct 105683 AGATGCCCTTACTGACCGGGGAACCTTCGTACGTCTCGTAGGGGCCGTGTTCGGCGGCTA 105624 Query 148537 GTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCA 148596 || || |||||||| || || |||||||||| ||||| ||||| ||||||||| Sbjct 105623 ACTCACAACTCGCCTCCAGAGCAGCGTAGTAAATGGTCTCAAAGATTTGGATGTTGAGCA 105564 Query 148597 GCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCT 148656 || ||| |||||| | || ||||| | | | ||| ||||| || | || | Sbjct 105563 GCTGAGCCTCAGGGCTTTCAAATGGATAACGCATCAGGATAAAGGCGTCAGCCAATCCTT 105504 Query 148657 GTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTC-TCGAGCGGA 148715 | || || | || || |||| ||| || || || | | ||| || | || Sbjct 105503 GGACTCCAATTCCTATTGGCCTGTGGCGCATATTAGA-CCTCTTGGCCTCTTCCACTGGG 105445 Query 148716 TAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGT-AATTCTGCG 148774 |||| ||| |||||| ||||||| | || | || | || || || | ||| Sbjct 105444 TAGTAGTTTATGTCGATAATCTTGTTTAAGTTTCTGACAATTACTTTGGTCACAGATGC- 105386 Query 148775 CAGCAATTCAAAATCGTA---CTTGTCATCTACGATGCATCGGTTCACGGCGATAGAGGC 148831 ||| || ||| || || | ||| | || | | ||| | ||||| ||||| Sbjct 105385 CAGTTTTTTAAAGTCATAAGTCCGCTCAGGTGTGACGTACATGTTGAGAGCGATGGAGGC 105326 Query 148832 TAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATT 148891 |||||||| || ||| ||| ||| | | |||| || ||||| || | ||| || || Sbjct 105325 CAGATTGCAGACAGCCACCTCGTCCTTGCTGGTGTATTCGACGATTTCTGTGCAGAGGTT 105266 Query 148892 GCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTA 148951 |||||| ||||| |||| |||| || |||||||| |||||||| || || ||||| Sbjct 105265 GCTGCACTTGATGGTCCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCRTCTTTGTA 105206 Query 148952 CAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTC 149008 |||||||||||| |||||||| ||| | || | || | ||| ||| | Sbjct 105205 CAGCATGTACGGCGTCCCAGTTTCTGTCTGTGACTCAATGATGGCGTACC---ACAGCTG 105149 Query 149009 CTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTC 149068 ||| || ||| ||| | | ||||||| ||||||| || || ||| ||| Sbjct 105148 CTGAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCGTATCTGGTGTAGAGCTCCTC 105089 Query 149069 GAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCA 149128 ||| |||| || |||| ||||| || |||||||| | | ||| ||||| || ||||| Sbjct 105088 AAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCA 105029 Query 149129 CACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAG 149188 | | | | ||| | |||||| || || || || | ||| || ||||| | || Sbjct 105028 GTCTTCATTATTCTCCACCCTCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAAAAG 104969 Query 149189 GTCGCGCGCCTTGCAG-TCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATA 149247 ||| | || || || | ||||| ||| |||| ||| | || | | || | Sbjct 104968 GTCCCTCG-CTCGCTGCTCTTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACA 104910 Query 149248 TGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC----CTTGCGCTTGCCGCCC 149303 || ||||| ||||| | ||||| |||| || || ||| | ||||| ||| Sbjct 104909 CATCAAAATGCCAGGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTG-TTGCCCCCC 104851 Query 149304 TGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCA 149363 |||||||||| || | ||||||| | || | | ||| || | | ||| ||| Sbjct 104850 TGGTCGACGTAACGTGCAGTGTTGTTGTAGACCCTCAGCATGGGGACGAGCCCATTGGAG 104791 Query 149364 GTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTG-TGCA------CGTT 149416 |||||| || || | |||| || || | || | || |||| || | Sbjct 104790 CAGCCGTTGGT---GCCA--GCGA-TGTAGCTCCCTGTTGATCTGATGCAGCTGACCGCT 104737 Query 149417 GACGCCGATGCCGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGAT 149476 || ||||| |||||| | | || |||||| ||||| | || || |||||| Sbjct 104736 -ACRCCGATTCCGCCGGCCGATTTGGAGATGAGGGCGCATTGCTTCAGTGTGTCGTAGAT 104678 Query 149477 GCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCA-CGAGCACATTTGCGGAAAAC 149535 |||||||||||||||| |||||| | ||||| ||||| | || ||| || || Sbjct 104677 GCCCTCGATGCTGTCGTCCTTCATTGCAAGCAGGAAGCAGCTAG-ACAGCTGTGGCCTGT 104619 Query 149536 GCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCT 149595 || || || ||| | ||| || |||||| || || | |||| || || | Sbjct 104618 TGGTTCCAGCATTGAAGAGGGTTGGAGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGT 104559 Query 149596 CGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCA 149655 ||| | ||||| | ||| || || || ||||| || | ||| || | ||| | Sbjct 104558 TGTAGGTCTCGATGGCTGCGTCGATATCCGTCCCGTGGATTCCCACGGCCACTCTCATGA 104499 Query 149656 GCATATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAGCCGTTTTCTA 149715 |||| || ||||| ||||| ||||| ||| | |||| || |||| |||| | || | Sbjct 104498 GCATGTGTTGCGGCCGCTCAGCCACCTTGCTGTCAATCTTCAGCAGGTAGGAGCGCTCCA 104439 Query 149716 GTGTCTTGTAGCCAAAGTACTTGTAG 149741 | |||||| |||| ||| | |||||| Sbjct 104438 GAGTCTTGAAGCCGAAGAAGTTGTAG 104413 >seq1605 Length=404251 Score = 143 bits (158), Expect = 3e-29 Identities = 155/203 (76%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || ||| | | | || || |||||||| | Sbjct 108237 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA-TCTTCCAGCTGCTTTC 108295 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | ||||||| ||||||||| ||||||||||| || ||||| |||||| || Sbjct 108296 CTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCCTCTTTGTCCTGGATCTTAGCCT 108355 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| |||||||||| || | ||||| ||| ||||| ||||| | Sbjct 108356 TCACATTCTCAATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCCGTCAGGG 108415 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || || || ||||||||| || Sbjct 108416 TCTTGACAAAGATCTGCATGCCT 108438 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 133518 TTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTT 133577 ||||| || | ||||||| ||||||||| ||||||||||||||||| || |||||| Sbjct 108729 TTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCCTGGATCTTA 108788 Query 133578 TGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTC 133637 ||| | | ||||| ||||| |||||||||| || | ||||| ||| ||||||||| Sbjct 108789 GCCTTCACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 108848 Query 133638 AGAGTTTTTACGAAAATCTGCAT 133660 || || || || || |||||||| Sbjct 108849 AGGGTCTTGACAAAGATCTGCAT 108871 >seq33 Length=2144867 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || |||||||||| Sbjct 1190709 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 1190651 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||||||||| |||||||| ||||| ||| || || Sbjct 1190650 CGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCT 1190591 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| |||||| ||||||| || || | ||||| ||| ||||| || || | Sbjct 1190590 TTACATTTTCAATTGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGG 1190531 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || |||||||| Sbjct 1190530 TTTTCACAAAGATCTGCAT 1190512 Score = 125 bits (138), Expect = 7e-24 Identities = 149/200 (75%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || |||||||||| Sbjct 1190937 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 1190879 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| |||||||||||| || ||||| ||||| || |||||| | Sbjct 1190878 CAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCCTCCTTATCCTGGATCTTAGCTT 1190819 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| ||||||| || || | ||||| ||| ||||| || || | Sbjct 1190818 TCACGTTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGG 1190759 Query 133642 TTTTTACGAAAATCTGCATG 133661 |||| || || ||||||||| Sbjct 1190758 TTTTCACRAAGATCTGCATG 1190739 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || |||||||||| Sbjct 1213450 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 1213392 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || |||| ||||||||| || || || ||||| ||||| ||| || || Sbjct 1213391 CAGCGAAGATCAGCCTCTGCTGGTCAGGGGGAATCCCTTCTTTGTCCTGGATTTTGGCCT 1213332 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| |||||| ||||||| || || | ||||| ||| ||||| || || | Sbjct 1213331 TCACATTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGG 1213272 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 1213271 TCTTGACGAAGATCTGCAT 1213253 Score = 113 bits (124), Expect = 4e-20 Identities = 146/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || ||| | | | || || |||||||||| Sbjct 1190481 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 1190423 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || || ||||| |||||||| ||| || || Sbjct 1190422 CGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCCTCCTTGTCCTGGATTTTGGCCT 1190363 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| |||||| ||||||| || || | ||||| ||| ||||| || || | Sbjct 1190362 TTACATTTTCAATTGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGG 1190303 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 1190302 TCTTGACAAAGATCTGCAT 1190284 >seq34 Length=1455329 Score = 102 bits (112), Expect = 8e-17 Identities = 97/124 (78%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||||||||| || | ||| ||||||||| ||||||| ||||| || | |||| Sbjct 919613 TGTACTCTACGATTTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGAT 919672 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||||||| |||||||| || |||||||| ||||| || || |||||||| ||||| Sbjct 919673 TGCTCTTCCTGTTGCAGGCATCCTTGTAAAGCATATATGGCGTACCAGTTTCTGTCTGCG 919732 Query 148984 TTTC 148987 ||| Sbjct 919733 ATTC 919736 >seq173 Length=537686 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 133557 CCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCG 133616 ||||||||||| ||||||| ||| | | |||| ||||| ||||||| || || Sbjct 457463 CCTTCCTTGTCCTGGATCTTTGCCTTTACATTTTCAATAGTGTCACTGGGCTCAACTTCA 457522 Query 133617 ACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 | ||||| |||||| || ||||| || |||||||| ||||||||| Sbjct 457523 AGGGTGATGGTTTTCCCCGTCAGCGTCTTTACGAAGATCTGCATG 457567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483380694201880