Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq288 129 7e-25 seq849 113 5e-20 seq1480 102 9e-17 seq2039 86.0 7e-12 >seq288 Length=2684394 Score = 129 bits (142), Expect = 7e-25 Identities = 358/539 (66%), Gaps = 29/539 (5%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 |||||||| | || || || |||| | ||| |||||||| ||||||||| ||| | Sbjct 1494620 GCCAGTTCCTTGGGCGAGCTGAAGTCATCCACATGAATGAAGGCGTCTCCCTGGATAAAG 1494561 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || ||||||| || | || || || || | || || | || | | |||| Sbjct 1494560 TTCTCATAATTCTGCCTTGGTGGGCCAAGAACCACTGGCACTGTCCCCAC--TGAGAGTG 1494503 Query 177066 CG--GTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGA 177123 | ||| ||||| || ||||| |||||| |||| | |||||||||||| || ||||||| Sbjct 1494502 GGTTGTACAGTTTCTCAGTAATGTAGTCCTTGTGGATGGAGTTCTCAAATGCCAGATAGA 1494443 Query 177124 ATTTACAG--GAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTAC 177181 |||| ||| | ||| || |||| | |||| | ||| | || || || || | | Sbjct 1494442 ATTTGCAGCTGGCGATGGT--GGGGAAGTAGTCTTGATCAGAGATGTACTCCCCAAAGGC 1494385 Query 177182 GTTCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTCAC 177241 | || ||| |||| | || |||||||| ||||| ||| ||| | || ||| Sbjct 1494384 TTGTCCATATGCATGAACCTCAATGTGTTTGTACAGCTCATTGTAATATTTTACTCGCAC 1494325 Query 177242 GTGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGCGGGAACGGG 177301 ||||| | |||||| ||||| || | |||||| | | |||| | ||||| || | | Sbjct 1494324 ATGGTCCTGGTTCCAGTTGCTCACAATCCAGCAGATCATCTTG-TTTTTGCTGG---GTG 1494269 Query 177302 ATTCGATACTAATGCAGTGTCTCTG-AGC-GTTAGTGATCCATAGGGCACGTGAATATCC 177359 | | | | | | | ||||| || | || ||||| ||||| | ||| || Sbjct 1494268 GTAC-AAAATCCTCCTCCCCCTCTGCTGCTACGATGGACCCATAAGGCACTTCAATGTCA 1494210 Query 177360 GAGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTAT-------ACCTTGTTT 177412 | || | | ||| | | || |||||||| ||||| ||||| | || | | Sbjct 1494209 GCATCCTGACGGTAATTGAGAGTCAGATTGAACAGGTTCTCTATCCCAGCCAACTGGGAT 1494150 Query 177413 GAAGGGGCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTC 177471 ||| ||| || ||||| || |||||||||||||||||||| || || | ||||| Sbjct 1494149 GAA-----TGTGAC--GGCGACTCAAAGTTCATCCATATCCACTTCTGGAATGATGGTC 1494098 >seq849 Length=142815 Score = 113 bits (124), Expect = 5e-20 Identities = 233/342 (68%), Gaps = 6/342 (2%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | || || ||| |||| | ||| |||||||| ||||||||| ||| | Sbjct 26832 GCCAGCTCTTTGGGTGAGGTGAAGTCCTCCACATGAATGAAGGCGTCTCCCTGGATAAAG 26773 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || ||||||| ||| | || || || || | || || | || | | || | Sbjct 26772 TTCTCATAATTCTGTCTGGGTGGGCCAAGAACCACTGGCACTGTCCCCACTGTCAGCGGG 26713 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| || ||||| |||||| |||| | |||||||||||||| ||||||||| Sbjct 26712 TTGTACAGTTTCTCAGTAATGTAGTCCTTGTGGATGGAGTTCTCAAACGAGAGATAGAAC 26653 Query 177126 TTACAGGAAGATAGTAGCGGG-ATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 || || | | || | | ||| | ||||| | || | | ||| || | | | | Sbjct 26652 TTGCA-GCTGGTAATGGTGGGTAAAAAGTCTTGGTCAG--AGATAGGCTTCCCAAAGGCT 26596 Query 177185 C--CCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTCACG 177242 | || ||| || || || | |||||| | ||||| ||| ||| || | || | Sbjct 26595 CGTCCATATGTGTGAATCTCCACGTGTTTTTTCAGCTCATTGTAATATTTCACCCGCATG 26536 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTG 177284 |||| | |||||| ||||| || | ||||||||| | |||| Sbjct 26535 TGGTTCTGGTTCCAGTTGCTCACAATCCAGCAAACCAGCTTG 26494 >seq1480 Length=148592 Score = 102 bits (112), Expect = 9e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | || || ||| |||| | ||| |||||||| ||||||||| ||| | Sbjct 122041 GCCAGCTCTTTGGGTGAGGTGAAGTCCTCCACATGAATGAAGGCGTCTCCCTGGATAAAG 122100 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || ||||||| ||| | || || || || | || || | || | || | Sbjct 122101 TTCTCATAATTCTGTCTGGGTGGGCCAAGAACCACTGGCACTGTCCCCACTGACAGCGGG 122160 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| || ||||| |||||| |||| | |||||||||||||| ||||||||| Sbjct 122161 TTGTACAGTTTCTCAGTAATGTAGTCCTTGTGGATGGAGTTCTCAAACGAGAGATAGAAC 122220 Query 177126 TTACAG 177131 || ||| Sbjct 122221 TTGCAG 122226 Score = 87.8 bits (96), Expect = 2e-12 Identities = 131/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| || | || || ||| |||| | ||| |||||||| |||| |||| ||| | Sbjct 16753 GCCAGCTCCTTGGGTGAGGTGAAGTCCTCCACATGAATGAAGGCGTTTCCCTGGATAAAG 16812 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || || ||||||| ||| | || || || || | || || | || | || | Sbjct 16813 TTCTCATAATTCTGTCTGGGTGGGCCAAGAACCACTGGCACTGTCCCCACTGACAGCGGG 16872 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| || ||||| |||||| |||| | |||||||||||| || |||||||| Sbjct 16873 TTGTACAGTTTCTCAGTAATGTAGTCCTTGTGGATGGAGTTCTCAAATGCCAGATAGAAC 16932 Query 177126 TTACAG 177131 || ||| Sbjct 16933 TTGCAG 16938 >seq2039 Length=25326 Score = 86.0 bits (94), Expect = 7e-12 Identities = 133/188 (71%), Gaps = 4/188 (2%) Strand=Plus/Plus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| || | || || || |||| | ||| |||||||| ||||||||| ||| ||| Sbjct 12117 GCCAGCTCCTTGGGCGATTTGAAGTCATCCACATGAATGAAGGCGTCTCCCTGGA--TAA 12174 Query 177006 --TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAG 177063 || || ||||||| ||| | || || || || | || || | || | || | Sbjct 12175 CGTTCTCATAATTCTGTCTGGTTGGGCCAAGAACCACTGGCACTGTCCCCACTGACAGCG 12234 Query 177064 ATCGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGA 177123 ||| ||||| || ||||| ||||| |||| |||||||||||||| || ||||||| Sbjct 12235 GGTTGTACAGTTTCTCAGTAATGTAGTCTTTGTGGACGGAGTTCTCAAATGCCAGATAGA 12294 Query 177124 ATTTACAG 177131 | || ||| Sbjct 12295 ACTTGCAG 12302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578384011835200