Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq1696 179 4e-40 seq33 89.7 5e-13 seq1605 84.2 2e-11 seq34 84.2 2e-11 >seq1696 Length=952724 Score = 179 bits (198), Expect = 4e-40 Identities = 935/1468 (64%), Gaps = 34/1468 (2%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGATACACATTGCTAGTGAAAGGC 146952 ||||| | |||||||| || | |||||| | | | || | ||||| ||| | | | Sbjct 105900 TTGACGATCTGAAACTCTCCTGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCC 105841 Query 146953 TCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACC 147012 || | ||||| || ||||| | || ||||| |||| || || ||||| |||| | Sbjct 105840 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTTGGCATTGGAGCCAGC 105781 Query 147013 AACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCAC 147072 | || || | || |||| || || ||||||| | | |||||||||| Sbjct 105780 AGCAGGCTGTTCCTCACGCCGTGTTTGGCGACCTTCTCCTTCAGCGCCTTCCAGTCCCAC 105721 Query 147073 ATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCCTCGACTGGCGGGACTG 147132 | || |||||| ||||||||||||||||||| | || |||| | || Sbjct 105720 AGGTCCGTTGGCGTCTTCTTCCACATGTCGTACTGGAAGATGCCCTTACTGACCGGGGAA 105661 Query 147133 CCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCC-AATTCACAGCTTGCCTCGAGCGC 147191 || || |||| |||| |||| | | ||| | || ||||| || ||||| || || Sbjct 105660 CCTTCGTACGTCTCGTAGGGGCCGT-GTTCGGCGGCTAACTCACAACTCGCCTCCAGAGC 105602 Query 147192 TCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTA 147251 | ||||| ||||| || |||||| |||| || | || || ||| || | Sbjct 105601 AGCGTAGTAAATGGTCTCAAAGATTTGGATGTTGAGCAGCTGAGCCTCAGGGCTTTCAAA 105542 Query 147252 AGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGGTCG 147311 || ||||| || | |||||| || ||||| || |||| || | || || || | Sbjct 105541 TGGATAACGCATCAGGATAAAGGCGTCAGCCAATCCTTGGACTCCAATTCCTATTGGCCT 105482 Query 147312 ATGCTTTTCGTTGCTGCGCTTCGCG-CTCGCTATGGGATAGTGGTTGCGATCAATAATCT 147370 || || | ||| || || | |||| |||| ||| || ||||||| Sbjct 105481 GTGGCGCATATTAGACCTCTTGGCCTCTTCCACTGGG-TAGTAGTTTATGTCGATAATCT 105423 Query 147371 TGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCC 147430 |||| | ||| | || | ||||| || | | | ||||| | || |||||||||| Sbjct 105422 TGTTTAAGTTTCTGACAATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCATAAGTCC 105363 Query 147431 CGTCTTC-GACACGTACGCATTGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTC 147489 || | |||||| || ||| | ||||| || |||||||||||||| ||| | Sbjct 105362 GCTCAGGTGTGACGTAC--AT--GTTGAGAGCGATGGAGGCCAGATTGCAGACAGCCACC 105307 Query 147490 TCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCC 147549 || || | | |||| | |||||||| | ||| ||||||||||| || ||| ||| Sbjct 105306 TCGTCCTTGCTGGTGTATTCGACGATTTCTGTGCAGAGGTTGCTGCACTTGATGGTCCCC 105247 Query 147550 AAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCG 147609 | ||| ||||| ||||| |||| ||||| || |||||| | ||||||||||| || Sbjct 105246 AGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCRTCTTTGTACAGCATGTACGGCGTCCCA 105187 Query 147610 GTCTCGACTTGCGTTTCAACGATAAACCTA-TGCAGGTCCTGCGC--TC-GCACCCGCTG 147665 || || || | |||| ||| | || ||| | ||| || || ||| |||| Sbjct 105186 GTTTCTGTCTGTGACTCAATGAT-GGCGTACCACAGCTGCTGAGCCTTCACCACACGCT- 105129 Query 147666 CCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCA 147725 || | ||||| || ||||| | ||| | | ||||||||| || || |||| Sbjct 105128 -TGA-CCCTCCCCTCCTTCTCGTATCTGGTGTAGAGCTCCTCAAACTCCTCCCCCCAGCA 105071 Query 147726 ATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTT--- 147782 ||| | || ||||| || | |||||||||||| ||||| ||| || || Sbjct 105070 CTCGTCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCA---GTCTTCATTATTCTC 105014 Query 147783 AACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATAAGATCGCGCGCT--TTG 147840 || | ||| || || || || | |||||| ||||| | ||| || | |||| || Sbjct 105013 CACCCTCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAAAAGGTCCCTCGCTCGCTG 104954 Query 147841 CAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAG 147900 | || || ||| |||| |||| | || | | | | | || |||||| Sbjct 104953 C--TCTTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAATGCCAG 104896 Query 147901 GGTTCAATGTAGACGGCCAGCGCACC---TTTACGCTTTCCGCCCTGGTCGACATGGCGC 147957 || || | ||| | ||| | || || | | || || ||||||||||| | || Sbjct 104895 GGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCCCCCTGGTCGACGTAACGT 104836 Query 147958 ACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAA 148017 | ||||||| | || | || |||||| | || || | | |||||||||| | Sbjct 104835 GCAGTGTTGTTGTAGACCCTCAGCATGGGGACGAGCCCATTGGAGCAGCCGTTGGTGCCA 104776 Query 148018 TTGATCTTGCTGCCGCGGGCTCGCACTTCG-TGCACGTTAACGCCAATGCCGCCGCCGTA 148076 ||| | ||| || | || | | || || | || || || |||||| | | Sbjct 104775 GCGATGTAGCTCCCTGTTGATCTGATGCAGCTGACCGCT-ACRCCGATTCCGCCGGCCGA 104717 Query 148077 CTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTT 148136 || || ||| ||||| | || ||| ||||||||| ||||||||||||| || Sbjct 104716 TTTGGAGATGAGGGCGCATTGCTTCAGTGTGTCGTAGATGCCCTCGATGCTGTCGTCCTT 104657 Query 148137 GACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGT 148196 | |||||| || || | ||| || || | ||||| || ||| ||||| Sbjct 104656 CATTGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTGGTTCCAGCATTGAAGAGGGT 104597 Query 148197 GGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTC 148256 ||| ||||| || ||| | || | || || | || ||||| || || | || Sbjct 104596 TGGAGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCGATGGCTGCGTC 104537 Query 148257 GATGT-CGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGG 148315 ||| | |||| ||||| || |||| || || | |||||||||||| || || || || | Sbjct 104536 GATATCCGTC-CCGTGGATTCCCACGGCCACTCTCATGAGCATGTGTTGCGGCCGCTCAG 104478 Query 148316 CAACTTGATTGTTGATCTTGAGAAGATA 148343 | || | ||| ||||| || || || Sbjct 104477 CCACCTTGCTGTCAATCTTCAGCAGGTA 104450 >seq33 Length=2144867 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || ||| || |||||| ||||| || |||| | Sbjct 1190705 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 1190646 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||||| ||||||||||| || ||||| || | Sbjct 1190645 AAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCCTTTACA 1190586 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || ||| | ||||| || || | || | || || ||||| || ||||| Sbjct 1190585 TTTTCAATTGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTC 1190526 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 1190525 ACAAAGATCTGCAT 1190512 >seq1605 Length=404251 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/226 (68%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||||| |||| || | | | ||||| || || |||||||||||| || ||| Sbjct 108213 ACGGAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 108272 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | |||| || | ||| || || ||||| ||||| Sbjct 108273 GCGGCCATCTTCCAGCTGCTTTCCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCC 108332 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||| || || || |||| | || | || || | ||||||||||| | Sbjct 108333 CTCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCCACTTCCAG 108392 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATGACT 132127 || | || || || ||||| || || | || ||||||||| || Sbjct 108393 GGTGATGGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCATGCCT 108438 >seq34 Length=1455329 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| |||||||| | ||| || |||||| |||| ||| |||| ||||||||||| Sbjct 919613 TGTACTCTACGATTTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGAT 919672 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCG 147622 |||| |||| ||||| || || ||| | ||||| || || || || || |||| Sbjct 919673 TGCTCTTCCTGTTGCAGGCATCCTTGTAAAGCATATATGGCGTACCAGTTTCTGTCTGCG 919732 Query 147623 TTTCAACGATA 147633 ||||| |||| Sbjct 919733 ATTCAATGATA 919743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476571659143320