Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq1335 105 2e-19 seq4464 98.7 3e-17 seq161 98.7 3e-17 seq1266 82.4 2e-12 >seq1335 Length=1762115 Score = 105 bits (116), Expect = 2e-19 Identities = 80/92 (87%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 2750 TCTTTGTACTGTGTTTATG-GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC 2808 |||||| | | |||||| | || ||| |||||||||||||||||| |||||||||||||| Sbjct 1640700 TCTTTG-AGTATGTTTACGAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATC 1640642 Query 2809 TAAAGGTCCCTGGTTCAACCCCGGGCTTCAGC 2840 |||||||||||||||| | |||||| ||| || Sbjct 1640641 TAAAGGTCCCTGGTTCGATCCCGGGTTTCGGC 1640610 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1585261 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1585202 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1585201 CCGGGTTTCGGC 1585190 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1639827 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1639768 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1639767 CCGGGTTTCGGC 1639756 >seq4464 Length=1592 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1129 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1188 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1189 CCGGGTTTCGGC 1200 >seq161 Length=131688 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 62192 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 62133 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 62132 CCGGGTTTCGGC 62121 >seq1266 Length=507471 Score = 82.4 bits (90), Expect = 2e-12 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 2781 CAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCTTCAGC 2840 ||| ||||||||| |||||||||||||||||||||||||| ||| | |||||| |||||| Sbjct 175455 CAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGATTCGATCCCGGGTTTCAGC 175396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848449442865