Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq377 167 3e-35 seq1487 152 7e-31 seq1696 123 4e-22 seq1801 86.0 9e-11 seq913 86.0 9e-11 >seq377 Length=355286 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| || |||| ||||| Sbjct 208905 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCATCCAAGGCCATG 208958 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| || |||| | |||||| ||| Sbjct 208959 AGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGTATCGCTTCGGAGGCCTCCCGC 209018 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 || || | || |||||||||| ||| ||| | | | ||||||||||||||||| ||| Sbjct 209019 CTTGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTCCGC 209078 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | | | ||| || ||||||| ||||||||| ||||||||||||| Sbjct 209079 CTCCTGCTTCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 209127 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| || |||| ||||| Sbjct 227260 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCATCCAAGGCCATG 227313 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| || |||| | |||||| ||| Sbjct 227314 AGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGTATCGCTTCGGAGGCCTCCCGC 227373 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 || || | || |||||||||| ||| ||| | | | ||||||||||||||||| ||| Sbjct 227374 CTTGCTCACTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTCCGC 227433 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | | | ||| || ||||||| ||||||||| ||||||||||||| Sbjct 227434 CTCCTGCTTCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 227482 >seq1487 Length=42182 Score = 152 bits (168), Expect = 7e-31 Identities = 172/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| |||||||| |||||| | | || |||| ||| |||| ||||| Sbjct 33252 TACAAGGTGCTGAAGCAGGTCCACCCCAGCATCGG-----CATC-TCCTCCAAGGCCATG 33199 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| ||||| || ||||| |||| || || | | |||||| ||| Sbjct 33198 AGCATCATGAACTCCTTTGTGAATGACATCTTCGAGCGGATTGCCGGTGAGGCCTCCCGC 33139 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| |||| |||||||||| ||| ||| || | | ||||||||||||||||| | Sbjct 33138 CTGGCTCGCTACAACAAGCGCTCCACCATCAGCTCCAGGGAGATCCAGACCGCCGTCAGG 33079 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| ||| || |||||| ||||||||| |||||||| |||| Sbjct 33078 CTCCTGCTGCCCGGTGAGGTGGCCAAGCACGCCGTGTCCGAGGGAACCA 33030 Score = 113 bits (124), Expect = 6e-19 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 ||||||||||||| |||||||| ||||| || | | || |||| ||| || | ||| Sbjct 31049 TCTACAAGGTGCTGAAGCAGGTCCACCCT-GA--CATCGG--CATC-TCCTCCAGGGCCA 30996 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || ||||||||||| || || || || | | | || |||| |||||| | Sbjct 30995 TGAGCATCATGAACTCCTTCGTGAATGATACCTTTGGGCGGATCGCTGGTGAGGCCTCCC 30936 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 |||| || | || |||||||||| ||| || || | | ||||||||||||||||| Sbjct 30935 GCCTKGCTCTCTACAACAAGCGCTCCACCGTCAGCTCCAGGGAGATCCAGACCGCCGTCA 30876 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | ||| ||| || ||||||| ||| ||||| || |||||||||| Sbjct 30875 GGCTCCTGCTGCCCGGAGAGCTGGCCAAGCATGCCGTGTCTGAGGGCACCA 30825 >seq1696 Length=952724 Score = 123 bits (136), Expect = 4e-22 Identities = 202/291 (69%), Gaps = 8/291 (3%) Strand=Plus/Plus Query 259896 TGTCGCAGCAGTTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCC 259955 ||||| || ||| ||||||| || | || || ||||| ||||| || || | | Sbjct 104565 TGTCGGAGAAGTGGTTCACCCACGCCTCTCCAACCCTCTTCAATGCTGGAACCAACAGGC 104624 Query 259956 CGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATG 260015 | ||| || ||||| ||| | | ||||||| ||| |||||||||||||| | Sbjct 104625 CACAGCTGTCTAGCTGCTTCCTGCTTGCAATGAAGGACGACAGCATCGAGGGCATCTACG 104684 Query 260016 ACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCAC 260075 |||| || ||||| ||||| ||||||||||| |||||||||| ||||| | || | Sbjct 104685 ACACACTGAAGCAATGCGCCCTCATCTCCAAATCGGCCGGCGGAATCGGYGTAGCGG--- 104741 Query 260076 ACAAGGTGC----GCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGC 260131 || ||| | | | || |||| | || |||||||||||| ||||| || Sbjct 104742 -TCAGCTGCATCAGATCAACAGGGAGCTACATCGCTGGCACCAACGGCTGCTCCAATGGG 104800 Query 260132 CTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 || || |||||||| | || | ||| |||| || || |||||||||||| Sbjct 104801 CTCGTCCCCATGCTGAGGGTCTACAACAACACTGCACGTTACGTCGACCAG 104851 Score = 104 bits (114), Expect = 3e-16 Identities = 157/221 (71%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 262879 TGGGACTGGGACGCACTGCGGGCGTCGGTTCGACAG-CATGGCCTGCGCAACTCGTTGCT 262937 ||||||||| | || ||| || | ||| || || || ||| || | ||| |||| Sbjct 105722 TGGGACTGGAAGGCGCTGAAGGAGAAGGT-CGCCAAACACGGCGTGAGGAACAGCCTGCT 105780 Query 262938 CGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGTTCGA 262997 |||| | ||||| |||||| | || | |||||||||||||||| |||| | |||| Sbjct 105781 GCTGGCTCCAATGCCAACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGA 105840 Query 262998 GGTCATCACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTTACCGTGGTCAA 263057 || | ||| |||||||||||||| ||| | ||||| || || || ||| | ||||| Sbjct 105841 GGCCTACACCAGCAACATCTACACCCGCAGGGTGCTGTCAGGAGAGTTTCAGATCGTCAA 105900 Query 263058 CCGCCACCTGGTCAAGCGCATGGTGGCGCGCGGCCTGTGGA 263098 || |||||| |||| | || || | | || ||||||| Sbjct 105901 CCCTCACCTGCTCAAAGACCTGACGGAGAGGGGACTGTGGA 105941 >seq1801 Length=82634 Score = 86.0 bits (94), Expect = 9e-11 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 725073 GAGATCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCC 725132 ||||||||||||||||||||||| | ||| ||| || ||||||| ||||||||| ||| Sbjct 35260 GAGATCCAGACCGCCGTGCGCCTCCTGCTGCCCGGTGAGCTGGCCAAGCACGCCGTGTCC 35201 Query 725133 GAGGGCACCA 725142 |||||||||| Sbjct 35200 GAGGGCACCA 35191 >seq913 Length=88738 Score = 86.0 bits (94), Expect = 9e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1455979 GAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTAC 1456038 ||||| || | || ||||| |||||||||||||| || ||||||||||| || | ||| Sbjct 60484 GAGGCCCGGTGTTTCTACGGTTTCCAGATCGCCATGGAGAACATCCACTCGGAGATGTAC 60543 Query 1456039 TCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || ||||||||||| ||| |||||||||| Sbjct 60544 AGCCTGCTGATCGACACGTACATCAAGGACCC 60575 Score = 86.0 bits (94), Expect = 9e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1455979 GAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTAC 1456038 ||||| || | || ||||| |||||||||||||| || ||||||||||| || | ||| Sbjct 73955 GAGGCCCGGTGTTTCTACGGTTTCCAGATCGCCATGGAGAACATCCACTCGGAGATGTAC 73896 Query 1456039 TCGCTCCTGATCGACACCTACGTCAAGGACCC 1456070 || ||||||||||| ||| |||||||||| Sbjct 73895 AGCCTGCTGATCGACACGTACATCAAGGACCC 73864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177171049151194