Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq33 113 5e-20 seq1696 104 2e-17 seq1605 95.1 1e-14 >seq33 Length=2144867 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| |||| || ||||| || ||||| ||||| || ||||||||||| Sbjct 1190738 CCACCCCTGAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1190679 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| ||||| || Sbjct 1190678 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 1190619 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || ||||| || || || | ||||||| | || || Sbjct 1190618 ATGCCTTCTTTGTCCTGGATTTTGGCCTTTACATTTTCAATTGTGTCGCTGGGCTCAACC 1190559 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | ||||| || || || ||||| Sbjct 1190558 TCCAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 1190512 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || ||||| |||| || ||||| || ||||| ||||| || ||||||||||| Sbjct 1190510 CCACCCCTGAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1190451 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 1190450 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 1190391 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || ||||| || || || | ||||||| | || || Sbjct 1190390 ATGCCCTCCTTGTCCTGGATTTTGGCCTTTACATTTTCAATTGTGTCGCTGGGCTCAACC 1190331 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || || || | || || || || || ||||| || Sbjct 1190330 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATCTT 1190281 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 134490 CCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACG 134549 || ||||| |||| || ||||| || ||||| ||||| || ||||||||||| | | Sbjct 1190963 CCCCTGAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGG 1190904 Query 134550 GTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATG 134609 ||| | || || ||||| ||||| || || |||| | |||||| ||||| || ||| Sbjct 1190903 GTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGGGGAATG 1190844 Query 134610 CCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCG 134669 || || || || || || || ||| || || | ||||| | || || || Sbjct 1190843 CCCTCCTTATCCTGGATCTTAGCTTTCACGTTCTCAATGGTGTCACTGGGCTCAACCTCC 1190784 Query 134670 AGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||| || || || | ||||| || || || ||||| Sbjct 1190783 AGGGTGATGGTCTTGCCAGTGAGGGTTTTCACRAAGATCTGCAT 1190740 Score = 82.4 bits (90), Expect = 8e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 1213479 CCACCCCTCAGACGGAGAACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1213420 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||| || || |||| | |||||| || || || Sbjct 1213419 AGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGA 1213360 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || |||||||| || || ||||| || || || | |||||| | || || Sbjct 1213359 ATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTCTCAATGGTGTCGCTGGGCTCAACC 1213300 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || || || | || || ||||| || ||||| || Sbjct 1213299 TCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCATCTT 1213250 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| |||| || ||||| || ||||| ||||| || ||||||||||| Sbjct 1213859 CCGCCTCTGAGACGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 1213800 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| || || ||||| |||| | |||||| || || || Sbjct 1213799 AGGGTGCGTCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 1213740 Query 134607 ATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || || || || || Sbjct 1213739 ATGCCCTCCTTATCCTGGATCTT 1213717 >seq1696 Length=952724 Score = 104 bits (114), Expect = 2e-17 Identities = 857/1386 (62%), Gaps = 24/1386 (2%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 ||||||||||| || | ||||| ||||| || ||||| || || ||||| ||| | Sbjct 104489 CAACACATGCTCATGAGAGTGGCCGTGGGAATCCACGGGACGGATATCGACGCAGCCATC 104548 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || ||| | || |||| ||| ||| || ||||| || || ||| | || Sbjct 104549 GAGACCTACAACCTGCTGTCGGAGAAGTGGTTCACCCACGCCTCTCCAACCCTCTTCAAT 104608 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 || || || ||| ||| || |||| || || |||| | ||| || |||||| Sbjct 104609 GCTGGAACCAACAGGCCACAGCTGTCTAGCTGCTTCCTGCTTGCAATGAAGGACGACAGC 104668 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGGA 7803 ||||| ||||| ||| |||| ||| | |||||| || ||||||| | ||||||| Sbjct 104669 ATCGAGGGCATCTACGACACACTGAAGCAATGCGCCCTCATCTCCAAATCGGCCGGCGGA 104728 Query 7804 ATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGA 7863 || || | || | | | | | | | || ||| ||||| ||||||||| Sbjct 104729 ATCGGYGTAGCGGTCAGCTGCATCAGATCAACAGGGAGCTACATCGCTGGCACCAACGGC 104788 Query 7864 AAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGAC 7923 ||| || | | |||||| || | || | ||| ||| | | || | || ||| Sbjct 104789 TGCTCCAATGGGCTCGTCCCCATGCTGAGGGTCTACAACAACACTGCACGTTACGTCGAC 104848 Query 7924 CAGGGGGGAAAGCGCAAA------GGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCG 7977 |||||||| || |||| || ||| ||||| || ||||||| ||||| Sbjct 104849 CAGGGGGGCAA---CAAAAGACCCGGAGCCTTCGCCATGTACCTGGAGCCCTGGCATTTT 104905 Query 7978 GACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGA-CAGCAAAGCGCG 8036 || | | | | || | ||| |||| ||| ||||| |||| |||| | Sbjct 104906 GATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACGGGAAAGGAAGAGCAGC-GAGCGAG 104964 Query 8037 CGATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGC 8096 || || |||| || ||||| | || || || || |||| | | || | | | Sbjct 104965 GGACCTTTTCTACGCCCTGTGGATCCCTGACCTCTTCATGAAGAGGGTGGAGAATAATGA 105024 Query 8097 ACAATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAA 8156 | | ||||| || ||||| || | ||||| | | | | || | Sbjct 105025 AGACTGGTCCCTGATGTGTCCGGCCGACTGCCCCGGGCTGGACGAGTGCTGGGGGGAGGA 105084 Query 8157 ATTTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGC 8216 ||||| | | |||| |||||| | || || | | ||| ||||| || Sbjct 105085 GTTTGAGGAGCTCTACACCAGATACGAGAAGGAGGGGAGGGTCAAGCGTGTGGTGAAGGC 105144 Query 8217 GCGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCT 8276 | | ||| |||||| || || | || | ||||| || | |||||||||||| Sbjct 105145 TCAGCAGCTGTGGTACGCCATCATTGAGTCACAGACAGAAACTGGGACGCCGTACATGCT 105204 Query 8277 GTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAG 8336 ||||||||| || |||||| || ||||| || || |||| ||||| ||||| Sbjct 105205 GTACAAAGAYGCCTGCAACAGGAAGAGCAACCAGCAGAATCTGGGGACCATCAAGTGCAG 105264 Query 8337 CAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCT 8396 ||| || ||| | ||||| || | |||| | ||||| ||||| || |||||||| Sbjct 105265 CAACCTCTGCACAGAAATCGTCGAATACACCAGCAAGGACGAGGTGGCTGTCTGCAATCT 105324 Query 8397 AGCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGCTCAAAC--ACTTACGACTTTGAA 8454 || || | | | ||| || ||| || | | | ||||| |||||| || Sbjct 105325 GGCCTCCATCGCTCTCAACATGTACGT-----CACACCTGAGCGGACTTATGACTTTAAA 105379 Query 8455 CAATTGAAAAACGCCGTG---CAAGTGACGGTACGCAATTTAGATCGCATCATTGATGTC 8511 || || | | ||| |||| | || | || ||| | || || || | Sbjct 105380 AAACTGGCA---TCTGTGACCAAAGTAATTGTCAGAAACTTAAACAAGATTATCGACATA 105436 Query 8512 AATTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGTG 8571 || | || || ||||||| || || || ||||||||||| || | || | Sbjct 105437 AACTACTACCCAGTGGAAGAGGCCAAGAGGTCTAATATGCGCCACAGGCCAATAGGAATT 105496 Query 8572 GGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAA 8631 || || ||||| |||| ||||| ||| | || |||| || | ||||||| || Sbjct 105497 GGAGTCCAAGGATTGGCTGACGCCTTTATCCTGATGCGTTATCCATTTGAAAGCCCTGAG 105556 Query 8632 GCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGC 8691 || | |||||||||| |||| || || | || |||| || | || || || Sbjct 105557 GCTCAGCTGCTCAACATCCAAATCTTTGAGACCATTTACTACGCTGCTCTGGAGGCGAGT 105616 Query 8692 TGTCAACTTGCCCGAGAATTGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGC 8751 ||| | | ||| ||| ||| | ||||| |||||| || ||| | ||| Sbjct 105617 TGTGAGTTAGCCGCCGAACACGGCCCCTACGAGACGTACGAAGGTTCCCCGGTCAGTAAG 105676 Query 8752 GGAATATTGCAATACGACATGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGAT 8811 || || || || |||||||||||||| ||||| || ||||| | |||| | Sbjct 105677 GGCATCTTCCAGTACGACATGTGGAAGAAGACGCCAACGGACCTGTGGGACTGGAAGGCG 105736 Query 8812 TTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCC 8871 |||| || | || || ||| || | || ||| || ||||| ||||| Sbjct 105737 CTGAAGGAGAAGGTCGCCAAACACGGCGTGAGGAACAGCCTGCTGCTGGCTCCAATGCCA 105796 Query 8872 ACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAAC 8931 || ||| | || || || || |||| |||||||| ||| | ||| | | ||||| |||| Sbjct 105797 ACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCTACACCAGCAAC 105856 Query 8932 GTGTAC 8937 | ||| Sbjct 105857 ATCTAC 105862 >seq1605 Length=404251 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 |||||||| | ||| |||| ||| ||||| || ||||| ||||| || |||||||||||| Sbjct 108205 TTTCCTCCACGGAGGCGCAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 108264 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | |||| | || || ||||| || ||||| || || | | |||||| || || Sbjct 108265 GACAGGGTGCGGCCATCTTCCAGCTGCTTTCCTGCGAAGATGAGCCTCTGCTGGTCAGGA 108324 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| ||||| || || || || || || || | ||||| | ||| Sbjct 108325 GGGATGCCCTCTTTGTCCTGGATCTTAGCCTTCACATTCTCAATGGTGTCACTGGGCTCC 108384 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| || || || | || || || || || ||||| Sbjct 108385 ACTTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACAAAGATCTGCAT 108434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505356470885240