Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1696 444 8e-120 seq34 127 3e-24 seq1698 102 1e-16 >seq1696 Length=952724 Score = 444 bits (492), Expect = 8e-120 Identities = 1271/1944 (65%), Gaps = 21/1944 (1%) Strand=Plus/Minus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| || || || |||||| | |||||||| | || | || || || || || Sbjct 105957 TTCTTCATGTCCTCGCTCCACAGTCCCCTCTCCGTCAGGTCTTTGAGCAGGTGAGGGTTG 105898 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || ||||| || || || | ||| || || ||||| || || ||||| || | || Sbjct 105897 ACGATCTGAAACTCTCCTGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 105838 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | || || || || ||||| || || || || || || |||||||| || |||| || Sbjct 105837 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTTGGCATTGGAGCCAGCAGC 105778 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | || || || | || ||| | || || || || || ||||| ||||| || Sbjct 105777 AGGCTGTTCCTCACGCCGTGTTTGGCGACCTTCTCCTTCAGCGCCTTCCAGTCCCACAGG 105718 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952 || | ||| ||||| | ||||| || | || || ||||| | || || Sbjct 105717 TCCGTTGGCGTCTTCTTCCACATGTCGTACTGGAAGATGCCCTTACTGACCGGGGAACCT 105658 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 | || || || || || || | | | |||| |||||||| ||||| | ||| || Sbjct 105657 TCGTACGTCTCGTAGGGGCCGTGTTCGGCGGCTAACTCACAACTCGCCTCCAGAGCAGCG 105598 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072 || ||||| || || || || | | ||||| || || || | || || |||||| Sbjct 105597 TAGTAAATGGTCTCAAAGATTTGGATGTTGAGCAGCTGAGCCTCAGGGCTTTCAAATGGA 105538 Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 ||| | | || ||||| || || |||||||| || || ||||| || || || || || Sbjct 105537 TAACGCATCAGGATAAAGGCGTCAGCCAATCCTTGGACTCCAATTCCTATTGGCCTGTGG 105478 Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192 | | |||| || || | || ||| | || || || || || || ||||| || || Sbjct 105477 CGCATATTAGACCTCTTGGCCTCTTCCACTGGGTAGTAGTTTATGTCGATAATCTTGTTT 105418 Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAAT---CGTCCA 69249 | |||| ||| | |||||| ||| ||||| ||| ||| | || || Sbjct 105417 AAGTTTCTGACAATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCATAAGTCCGCTCA 105358 Query 69250 TCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 | | || |||| || || || | || || ||||| || || || ||||| | Sbjct 105357 GGTGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTGCAGACAGCCACCTCGTCCTTG 105298 Query 69310 TTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGC 69369 | | |||| | || ||||| || || || || || ||||| ||||||||||| ||| Sbjct 105297 CTGGTGTATTCGACGATTTCTGTGCAGAGGTTGCTGCACTTGATGGTCCCCAGATTCTGC 105238 Query 69370 TGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATC 69429 || || ||||| |||| ||||| || ||||| || || |||| || |||||||| || Sbjct 105237 TGGTTGCTCTTCCTGTTGCAGGCRTCTTTGTACAGCATGTACGGCGTCCCAGTTTCTGTC 105178 Query 69430 TGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTC 69489 || || || || || | | ||| | | ||| || | || |||| | | | Sbjct 105177 TGTGACTCAATGATGGCGTACCACAGCTGCTGAGCCTTCACCACACGCTTGACCCTCCCC 105118 Query 69490 TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCA 69549 || || || ||| || || ||| || || || || ||||| || |||| || Sbjct 105117 TCCTTCTCGTATCTGGTGTAGAGCTCCTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCG 105058 Query 69550 GGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAAT 69609 || || || |||||||||| ||||| | |||| || || || | ||||| || Sbjct 105057 GGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCATTATTCTCCACCCTCTTCATGAAG 104998 Query 69610 AGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 || || || ||||| || || || ||| || || || | || | ||||| ||||| || Sbjct 104997 AGGTCAGGGATCCACAGGGCGTAGAAA-AGGTCCCTCGCTCGCTGCTCTTCCTTTCCCGT 104939 Query 69669 AttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728 || || || || || || || || | | |||| ||||||| || || || || || || Sbjct 104938 GTTCTTCTTCAGCTCCAGGAAGTCAAACACATCAAAATGCCAGGGCTCCAGGTACATGGC 104879 Query 69729 CATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGAC 69788 | | |||| |||| ||| || || ||||| || | ||| | |||||||| || ||||| Sbjct 104878 GAAGGCTCCGGGTCTTTTGTTGCCCCCCTGGTCGACGTAACGTGCAGTGTTGTTGTAGAC 104819 Query 69789 TCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCT 69848 |||||||| || | | ||||| || || || || |||| || || || ||| | Sbjct 104818 CCTCAGCATGGGGACGAGCCCATTGGAGCAGCCGTTGGTGCCAGCGATGTAGCTCCCTGT 104759 Query 69849 TGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACA 69908 || | || || | | || || ||||| || ||| ||| ||||| || || || Sbjct 104758 TGATCTGATGCAGCTGACCGCTACRCCGATTCCGCCGGCCGATTTGGAGATGAGGGCGCA 104699 Query 69909 ACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACA 69968 | |||| |||||| || || ||||| ||||| || || |||| ||| || || || Sbjct 104698 TTGCTTCAGTGTGTCGTAGATGCCCTCGATGCTGTCGTCCTTCATTGCAAGCAGGAAGCA 104639 Query 69969 GCTAGACATTTGATG-ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGA 70027 |||||||| || | ||| | ||||| ||||| || | || ||||| ||||| |||| Sbjct 104638 GCTAGACAGCTGTGGCCTGT-TGGTTCCAGCATTGAAGAGGGTTGGAGAGGCGTGGGTGA 104580 Query 70028 ACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGATGAA 70087 |||| || || || ||||| ||||| || || || |||| || |||||| | || | Sbjct 104579 ACCACTTCTCCGACAGCAGGTTGTAGGTCTCGATGGCTGCGTCGATATCCGTCCCGTGGA 104520 Query 70088 TTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTT 70147 |||| | || || | ||| | ||| || || || || || || || | | || | Sbjct 104519 TTCCCACGGCCACTCTCATGAGCATGTGTTGCGGCCGCTCAGCCACCTTGCTGTCAATCT 104460 Query 70148 TCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTT 70207 ||| |||||| || |||||||| || || || || ||||||| || || ||||| | Sbjct 104459 TCAGCAGGTAGGAGCGCTCCAGAGTCTTGAAGCCGAAGAAGTTGTAGGAGAAATCTCTGT 104400 Query 70208 CGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATC---CATAACAG 70264 |||| || || | || || || ||||| | | | ||| | || | | | Sbjct 104399 CGTAGATTATGGCCGAGTTGAGGCGGTCCTTGTTTGCGAGAACAACCTCGAGCGTCTCTT 104340 Query 70265 TAGGTGAGATAATCGGAGA---TCGTTTACCATTTTTAGGATTAACATAGTTGAATAAAT 70321 | || || || || || ||||| || ||| || | ||||| | | | Sbjct 104339 T---CGAAATCATGGGGGAGTGGCGTTT---GTTCAAAGGGTTGATGTAGTTATACAGGT 104286 Query 70322 CTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTC 70381 | ||||| ||||| || || | ||| || || || ||||| | || || | ||| || | Sbjct 104285 CCTCCATGACATCGCTGAACACTTTCTTCGTCTCTTTGTGCAGGTTGGAGACGGCGATGC 104226 Query 70382 TGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAG 70441 || || || || || ||||| || | || || || ||| || || || || || | Sbjct 104225 GTGCAGCGAGGATGGCGTAGTCGGGGTATTTGGTGGTGAGAGTGGCAGCAATCTCTGCCG 104166 Query 70442 CTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 | | || || | || | || || || ||| | || | || || || || ||||| | Sbjct 104165 CCAGTGTGTCGAGCTCCACGGTGGTGACCCCGCTGTACAAACCCTGGATCACCTTCATAG 104106 Query 70502 CTATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCT-AATACGA 70560 || | | || || | || || |||||| ||||| || || |||| |||||| Sbjct 104105 TGATCTGGGCTGGGTCAACAAACTCCAAGTTCAGCCCATAGCA-AAGCTTCTGGATACGA 104047 Query 70561 GATGTAATTTTATCAAACATAACA 70584 || || |||||||||||||| ||| Sbjct 104046 GAGGTGATTTTATCAAACATGACA 104023 >seq34 Length=1455329 Score = 127 bits (140), Expect = 3e-24 Identities = 106/130 (82%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 || ||||| |||||||| || ||||||| || ||||||||||||||||| ||||| || Sbjct 919624 ATTTCTGTGCATAGATTGCTGGATTTGATGGTGCCCAGATTTTGCTGATTGCTCTTCCTG 919683 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATA 69444 || ||||| ||||||||||| ||| | || ||||||||||| |||| ||||| || ||| Sbjct 919684 TTGCAGGCATCCTTGTAAAGCATATATGGCGTACCAGTTTCTGTCTGCGATTCAATGATA 919743 Query 69445 GATTTCCAAA 69454 | | ||||| Sbjct 919744 GTGTACCAAA 919753 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 68956 TATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAA 69015 || ||||||||||| || || | || ||||||||||| ||||| | ||| | ||| Sbjct 919047 TAGGTTTCATAAGGGCCGAGCTCTGATGCCAGTTCACAACTGGCCTCCAGGGCAGCATAA 919106 Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 || || || || || |||| | ||||| || || ||| | || || ||||| || Sbjct 919107 TAGATGGTCTCAAAGATCTGAATGTTGAGCAACTGGGCCTCTGGGCTTTCAAATGGGTAG 919166 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 | | ||| ||||| ||||| |||| ||||| || ||||| || || || || || | Sbjct 919167 CGCATAAGGATAAAGGCATCAGCCAGACCCTGCACACCAATTCCAATTGGCCTGTGACGT 919226 Query 69136 TTATTTGAACTTTCAGC 69152 || || || |||||||| Sbjct 919227 TTGTTAGACCTTTCAGC 919243 >seq1698 Length=2458952 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| || || ||||| | ||||| || | || |||||||||||||| || | ||| | Sbjct 826487 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGTCCAGGCATTAGGCCCCTCTTCT 826428 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| | || |||||||| || ||||| ||||| ||||| || || |||||||| | Sbjct 826427 TTAACCAGTAGATAGCAGCAAATGAACCAGAGAAGAAAATGCCCTCCACAGCTGCAAAAG 826368 Query 39759 CAACAAGTCTCTCTCC 39774 | |||| |||||| || Sbjct 826367 CCACAATTCTCTCCCC 826352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686851812328680