Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1284 114 1e-20 seq338 100 2e-16 >seq1284 Length=3161676 Score = 114 bits (126), Expect = 1e-20 Identities = 96/118 (81%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 87328 CCTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCA 87387 |||||||||| ||| || |||||| |||| ||||| || || ||| |||| || |||| Sbjct 694697 CCTGCTCCCATTTTGCTGAAATCTCTCTTGGATTGGAAGGTGTAGGCTGTTAATCCAGTG 694756 Query 87388 AACACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGTCA 87445 ||||||||||| || | ||| | | ||| ||||| |||||||||||||||||||||| Sbjct 694757 AACACAGCACAGGTGAGAAACAAAGCTTGCAGTATTGTGGAGTATTCATAGAAGGTCA 694814 >seq338 Length=963864 Score = 100 bits (110), Expect = 2e-16 Identities = 76/90 (84%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 77865 CTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTGGGA 77924 ||||||| ||||||||||| ||| |||||| |||||||||||||| ||| | ||| | Sbjct 150545 CTCTGACGAACGCCCAGGCGTCTCGCTCTGAGGCAAACTTCTTAAAAGAGGCAGATGGAA 150604 Query 77925 ATTTGTCTACTTGGCTCTTACATTCATCCC 77954 ||||||| |||||||||||||| || |||| Sbjct 150605 ATTTGTCCACTTGGCTCTTACACTCGTCCC 150634 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTT-GA 77369 |||||| |||||||||| ||| ||| ||||||||||| |||||| || ||||| | Sbjct 148569 CCAGACCACCTCCAGCTGTCCATTCAGTCTGTCCAGCTTCACAAAGTCTTCTTTGTTGGT 148628 Query 77370 CAACTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAG 77429 | |||| ||||| | || || |||||||||| | ||||||||||| ||||| | | Sbjct 148629 GATCTGA-CCTCCAGATTTCAACCGCCAGCCGTTCAGTTTCCAGTTCTTCACCCAGCTGG 148687 Query 77430 TCACACC 77436 ||||||| Sbjct 148688 TCACACC 148694 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 77576 AGCGGGTGATTATAACCCCAATATACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCGTTT 77635 |||||||| || ||||| || ||||| ||||| || |||||| |||||||||| Sbjct 149684 AGCGGGTGGTTGACTCCCCAGTAGACGCCGATGCCGGCCCGGGCTCCGCGCTGTCCGTTT 149743 Query 77636 GATAAGCAACAGCCGTCAGTGTAGACCACCACGGCGTCACC 77676 | |||| |||||||||||||| || ||||| |||||||| Sbjct 149744 GCCGAGCAGCAGCCGTCAGTGTAAACGACCACAGCGTCACC 149784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397423850405185