Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1696 242 5e-59 seq34 91.5 2e-13 >seq1696 Length=952724 Score = 242 bits (268), Expect = 5e-59 Identities = 960/1487 (65%), Gaps = 48/1487 (3%) Strand=Plus/Minus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || ||| | | ||||| |||| ||||| |||||| Sbjct 105955 CTTCATGTCCTCGCTCCACAGTCCCCTCTCCGTCAGGTCTTTGAGCAGGTGAGGGTTGAC 105896 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || |||||| |||| || || | ||||||||| | ||||| | || | Sbjct 105895 GATCTGAAACTCTCCTGACAGCACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGAT 105836 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | | || || || |||| ||| || ||||||||||| ||||||||||| |||| || || Sbjct 105835 GGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTTGGCATTGGAGCCAGCAGCAG 105776 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAG 110853 ||||| | | || | | || ||||| || | | |||||| | | Sbjct 105775 GCTGTTCCTCACGCCGTGTTTGGCGACCTTCTCCTTCAGCGCCTTCCAGTCCCACAGGTC 105716 Query 110854 C-TTGGTTTCACCTTCCCACATGTCAAACT-GAAGCACCCCTT-GGGACGCGGGAGAACC 110910 | |||| || ||| ||||||||| ||| |||| ||||| ||| |||| ||||| Sbjct 105715 CGTTGGCGTCTTCTT-CCACATGTCGTACTGGAAGATGCCCTTACTGAC-CGGG-GAACC 105659 Query 110911 CTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATGC 110970 || | || || |||| || || | | || || ||||| ||||||||||| | || Sbjct 105658 TTCGTACGTCTCGTAGGGGCCGTGTTCGGCGGCTAACTCACAACTCGCCTCCAGAGCAGC 105599 Query 110971 GTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATGC 111030 || || ||||| |||||||| | || | | || || ||| ||||||| Sbjct 105598 GTAGTAAATGGTCTCAAAGATTTGGATGTTGAGCAGCTGAGCCTCAGGGCTTTCAAATGG 105539 Query 111031 GTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGTG 111090 || || || ||||| | || || | ||||| || || | || || || ||||| Sbjct 105538 ATAACGCATCAGGATAAAGGCGTCAGCCAATCCTTGGACTCCAATTCCTATTGGCCTGTG 105479 Query 111091 TCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGTT 111150 |||||||||||| | || || || || || | ||| |||| || | ||| Sbjct 105478 GCGCATATTAGACCTCTTGGCCTCTTCCACTGGGTAGTAGTTTATGTCGATAATCTTGTT 105419 Query 111151 TAGATTTTTGGTAACAAT--CTTTGTGATTTCATG-AAGTTTTTCATAATCAAAAGTGCG 111207 || ||| || ||||| ||||| ||| ||||||| | | ||| |||| || Sbjct 105418 TAAGTTTCTG---ACAATTACTTTGGTCACAGATGCCAGTTTTTTAAAGTCATAAGTCCG 105362 Query 111208 AGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTC 111267 ||| |||| ||| | || ||||| || |||| |||||| |||||| ||| Sbjct 105361 ---CTCAGGTGTGACGTACATGTTGAGAGCGATGGAGGCCAGATTGCAGACAGCCACCTC 105305 Query 111268 ATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAA 111327 ||||| ||||| || | |||||||| || | |||| | ||| || ||||||| Sbjct 105304 GTCCTTGCTGGTGTATTCGACGATTTCTGTGCAGAGGTTGCTGCACTTGATGGTCCCCAG 105245 Query 111328 ATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGT 111387 ||||| ||||| |||||| ||||||| || || ||||| |||||||| |||||||| || Sbjct 105244 ATTCTGCTGGTTGCTCTTCCTGTTGCAGGCRTCTTTGTACAGCATGTACGGCGTCCCAGT 105185 Query 111388 CTCCGTCTGTGATTTGAGAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGG 111446 || |||||||| | | || || | ||| | | | | | || || || ||| Sbjct 105184 TTCTGTCTGTGACTCAATGATGGCGTACCACAGCTGCTGAGCCTTCACCACACGC-TTGA 105126 Query 111447 CCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCG 111505 ||| |||||| |||||| | |||||||| | ||||||||||| ||| | || ||| Sbjct 105125 CCCTCCCCTCCTTCTCGTATCTGGTGTAGAGCTCCTCAAACTCCTC-CCCCCAGCACTCG 105067 Query 111506 GAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGC 111565 || || || | | | ||||| | || ||||| | || | ||| |||| | Sbjct 105066 TCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGACCAGTCTTCATTATTCTCCACCCTC 105007 Query 111566 TTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCG 111625 |||||||| ||||| || |||||||||| | || || || || || |||||| Sbjct 105006 TTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAAAAGGTCCCTCGCTCGCTGCTCTTCC 104947 Query 111626 TCACCTTGGTTGAGTCGT-AACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAG 111684 | || ||| || | | ||| ||||| || | | ||| ||||| ||||| || Sbjct 104946 TTTCCCGTGTT-CTTCTTCAGCTCCAGGAAGTCAAACACATCAAAATGCCAGGGCTCCAG 104888 Query 111685 ATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGG 111740 || | |||| | ||| |||| | |||| | || | || || || || ||| Sbjct 104887 GTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCC-CCCTGGTCGACGTAACGTGCAGTGT 104829 Query 111741 CGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATAC 111800 ||| | || | ||||| || | | |||| || || || || || Sbjct 104828 TGTTGTAGACCCTCAGCATGGGGACGAGCCCATTGGAGCAGCCGTTGGTGCC-------A 104776 Query 111801 GAGATTTATTGGCTC-----TCACATCATGGATGTG-----CATCCCAATACCCCCAGCC 111850 | ||| || |||| | | | ||| | || | || || || || ||| Sbjct 104775 GCGATGTA---GCTCCCTGTTGATCTGATGCAGCTGACCGCTACRCCGATTCCGCCGGCC 104719 Query 111851 CACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCC 111910 | || ||||| | || || | | | || || | ||||| || | ||| ||| ||| Sbjct 104718 GATTTGGAGATGAGGGCGCATTGCTTCAGTGTGTCGTAGATGCCCTCGATGCTGTCGTCC 104659 Query 111911 TTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGG 111970 || | || | |||||||| || |||| ||| || || || ||||||||||||||| Sbjct 104658 TTCATTGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTGGTTCCAGCATTGAAGAGG 104599 Query 111971 GTTGGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGA 112029 ||||| | ||||| ||||| || | | |||| | || ||| ||||| | | | | Sbjct 104598 GTTGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGCAGGTTGTAGGTCTCGATGGCTGC 104540 Query 112030 ATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGT 112076 || || || ||||||||| || | || || | ||||| ||||| Sbjct 104539 GTCGATATCCGTCCCGTGGATTCCCACGGCCACTCTCATGAGCATGT 104493 >seq34 Length=1455329 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || |||||||||| |||||||| |||| ||| || || || || Sbjct 919599 CTCATCTTTGCTCGTGTACTCTACGATTTCTGTGCATAGATTGCTGGATTTGATGGTGCC 919658 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || ||| | || || |||||| ||||||| ||||||||||| ||||| || ||||| || Sbjct 919659 CAGATTTTGCTGATTGCTCTTCCTGTTGCAGGCATCCTTGTAAAGCATATATGGCGTACC 919718 Query 111385 CGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 || || ||||| |||| | |||| | ||||| Sbjct 919719 AGTTTCTGTCTGCGATTCAATGATAGTGTACCAAA 919753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627979896895200