Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Amphilophus_20citrinellus_20[genbank_20GCA_5F000751415.1_202014-09- 07] 6,637 sequences; 844,902,565 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1696 199 5e-46 seq913 105 8e-18 seq34 86.0 8e-12 seq1698 82.4 9e-11 >seq1696 Length=952724 Score = 199 bits (220), Expect = 5e-46 Identities = 892/1391 (64%), Gaps = 30/1391 (2%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 105861 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 105802 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT-TTTCCCTAATGCGT-T 118299 || || ||||| || |||| || |||||||| | | || | ||| | | | | | Sbjct 105801 GCCGTTGGCATTGGAGCCAGCAGCAGGCTGTTCCTCACGCCGTGTTTGGCGAC--CTTCT 105744 Query 118300 CCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGA 118359 |||| || || | |||||| | | | ||| | | || |||||| || |||||| Sbjct 105743 CCTTCAGCGCCTTCCAGTCCCACAGGTCCGTTGGCGTCTTCTTCCACATGTCGTACTGGA 105684 Query 118360 GGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCA 118419 ||| || | | || || || || | ||||| || ||||| | | | || | Sbjct 105683 AGATGCCCTTACTGACCGGGGAACCTTCGTACGTCTCGTAGGGGCCGTGTTCGGCGGCTA 105624 Query 118420 ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTG 118479 | || | |||||||| || || |||| || || || ||||| || | || | Sbjct 105623 ACTCACAACTCGCCTCCAGAGCAGCGTAGTAAATGGTCTCAAAGATTTGGATGTTGAGCA 105564 Query 118480 CCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCA-CAAAATAAATACATCCGCGAGACCT 118538 || ||||| | ||||| | || ||| || ||||| | || || | ||| Sbjct 105563 GCTGAGCCTCAGGGCTTTCAAATG-GATAACGCATCAGGATAAAGGCGTCAGCCAATCCT 105505 Query 118539 TGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGA 118598 ||||| || | || ||||| | || | |||||||||| || || ||||| || Sbjct 105504 TGGACTCCAATTCCTATTGGCCTGTGGCGCATATTAGACCTCTTGGCCTCTTCCACTGGG 105445 Query 118599 TAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGA 118658 || | || | ||||||| | | |||| ||| || | || || || | ||| Sbjct 105444 TAGTAGTTTATGTCGATAATCTTGTTTAAGTTTCTGACAATTACTTTGGTCACAG-ATGC 105386 Query 118659 -AGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGA 118717 || |||| | ||| || | || ||| |||| ||| | || ||||| || Sbjct 105385 CAGTTTTTTAAAGTCATAAGTCCG---CTCAGGTGTGACGTACATGTTGAGAGCGATGGA 105329 Query 118718 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAA 118777 |||||||| || |||| ||| ||||| ||||| || | ||||| ||||| | Sbjct 105328 GGCCAGATTGCAGACAGCCACCTCGTCCTTGCTGGTGTATTCGACGATTTCTGTGCAGAG 105269 Query 118778 GTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 118837 ||| | ||| ||||| |||| |||| || || ||| |||| || || || || Sbjct 105268 GTTGCTGCACTTGATGGTCCCCAGATTCTGCTGGTTGCTCTTCCTGTTGCAGGCRTCTTT 105209 Query 118838 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATC 118897 ||| |||||||| |||||||| || || || || |||| | || || | ||| || | Sbjct 105208 GTACAGCATGTACGGCGTCCCAGTTTCTGTCTGTGACTCAATGATGGCGTACCA--CAGC 105151 Query 118898 GGC--AGCTGGCAC-AGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGC 118954 || ||| ||| | || ||| | | |||||| | |||||| | |||||||| | Sbjct 105150 TGCTGAGCCTTCACCACACGC-TTGACCCTCCCCTCCTTCTCGTATCTGGTGTAGAGCTC 105092 Query 118955 TTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGA 119014 |||||||| || ||| | ||| ||||| || | | || || | || || Sbjct 105091 CTCAAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCAGTCGGCCGGACACATCAGGGA 105032 Query 119015 CCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAA 119074 ||| | || | ||| |||| ||||||||||||||| |||||||| || || |||| Sbjct 105031 CCAGTCTTCATTATTCTCCACCCTCTTCATGAAGAGGTCAGGGATCCACAGGGCGTAGAA 104972 Query 119075 GAGATCCCGACAGCGAGCT--TCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCC 119132 || |||| || ||| ||||| | ||| || || ||||| ||||| Sbjct 104971 AAGGTCCC--TCGCTCGCTGCTCTTCCTTTCCCGTGTTCTTCTTCAGCTCCAGGAAGTCA 104914 Query 119133 ATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGACC 119188 | | ||| ||||| || |||||||||| |||| | || ||| | | || Sbjct 104913 AACACATCAAAATGCCAGGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTG-CC 104855 Query 119189 AGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATC 119248 |||||| || || | |||||| ||| | || | ||||| || | || |||| Sbjct 104854 CCCCTGGTCGACGTAACGTGCAGTGTTGTTGTAGACCCTCAGCATGGGGACGAGCCCATT 104795 Query 119249 GGATTGGCCATTTGT-CCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGATGTGCA 119307 ||| ||| || || || ||| | | | || | ||||| | || | Sbjct 104794 GGAGCAGCCGTTGGTGCCAGCGATGTAGCTCCCTGTT-GATCTGATGCAGCTGACCGCTA 104736 Query 119308 TACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCC 119367 || || || || ||| | || ||||| | ||||| | | | || || ||||||| | Sbjct 104735 CRCCGATTCCGCCGGCCGATTTGGAGATGAGGGCGCATTGCTTCAGTGTGTCGTAGATGC 104676 Query 119368 CATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTG 119427 | ||||| ||| |||| |||| | ||||||||||| |||| || |||||| | Sbjct 104675 CCTCGATGCTGTCGTCCTTCATTGCAAGCAGGAAGCAGCTAGACAGCTGTGGCCTGTTGG 104616 Query 119428 TACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCG 119486 | ||||| |||||||| ||||| | |||||| ||||| || | | |||| | || | Sbjct 104615 TTCCAGCATTGAAGAGGGTTGGAGAGGCGTGGGTGAAC-CACTTCTCCGACAGCAGGTTG 104557 Query 119487 TAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAAC 119546 |||||||| | | | ||| || || |||||| || || | | || | ||| | | Sbjct 104556 TAGGTCTCGATGGCTGCGTCGATATCCGTCCCGTGGATTCCCACGGCCACTCTCATGAGC 104497 Query 119547 ATGTATTGGGG 119557 |||| ||| || Sbjct 104496 ATGTGTTGCGG 104486 >seq913 Length=88738 Score = 105 bits (116), Expect = 8e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||||| ||| || ||||| || |||| ||||| Sbjct 60974 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCCGGCATCAGGCCCCTCTTCT 60915 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| |||||| || || ||| |||||||||||||||||||||||||| ||||| | Sbjct 60914 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATCCCCTCCACGGCGGCGAAAG 60855 Query 130155 CAAAGAGACGCTC 130167 | | | |||||| Sbjct 60854 CCACCACACGCTC 60842 Score = 105 bits (116), Expect = 8e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||||| ||| || ||||| || |||| ||||| Sbjct 73465 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCCGGCATCAGGCCCCTCTTCT 73524 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| |||||| || || ||| |||||||||||||||||||||||||| ||||| | Sbjct 73525 TCAGCCAGAAGATGGCGGCAAAGGAGCCAGAGAAGAAGATCCCCTCCACGGCGGCGAAAG 73584 Query 130155 CAAAGAGACGCTC 130167 | | | |||||| Sbjct 73585 CCACCACACGCTC 73597 >seq34 Length=1455329 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||||| ||||| | |||||||||| |||| ||| ||||| ||||| Sbjct 918644 TAGATGTTGCTGGTGTATGCCTCAATGGACTCATTGTTGCCCAGGATCTGGGCAGTGGAA 918703 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 ||||||||||| || |||| || || || || Sbjct 918704 GCTGTGGGCATTGGGGCCAAAAGGAGACTATT 918735 >seq1698 Length=2458952 Score = 82.4 bits (90), Expect = 9e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | ||||| || || ||| || || || ||||| || |||| ||||| Sbjct 826487 CCTCGTCCCTGCTAATGAGCTCGTTGGAGTAGGTAAGTCCAGGCATTAGGCCCCTCTTCT 826428 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 | |||||| | || ||| |||||| ||||||||||| || ||||||||| Sbjct 826427 TTAACCAGTAGATAGCAGCAAATGAACCAGAGAAGAAAATGCCCTCCACA 826378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618383893069720